miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13410 3' -53 NC_003409.1 + 116714 0.66 0.966718
Target:  5'- aGGCUcCCGGCC-UCAGAcaAUGGuGGGc -3'
miRNA:   3'- -UCGGuGGCCGGuAGUCUa-UAUCuCUC- -5'
13410 3' -53 NC_003409.1 + 121389 0.66 0.959727
Target:  5'- uGGCCACgGGCgGUUcgucgcuuGGAccUGGAGGGg -3'
miRNA:   3'- -UCGGUGgCCGgUAG--------UCUauAUCUCUC- -5'
13410 3' -53 NC_003409.1 + 51642 0.66 0.955878
Target:  5'- uGGCgACCGGCUgaacCGGGUGUAGGuGGa -3'
miRNA:   3'- -UCGgUGGCCGGua--GUCUAUAUCUcUC- -5'
13410 3' -53 NC_003409.1 + 41911 0.66 0.947447
Target:  5'- gGGCaCACCGGCCAUCuacAGAcucgucaugugUAUGGcAGuGg -3'
miRNA:   3'- -UCG-GUGGCCGGUAG---UCU-----------AUAUC-UCuC- -5'
13410 3' -53 NC_003409.1 + 54955 0.66 0.947447
Target:  5'- aGGCCgGCCGGCCAcugCAGAUuggcUGGAc-- -3'
miRNA:   3'- -UCGG-UGGCCGGUa--GUCUAu---AUCUcuc -5'
13410 3' -53 NC_003409.1 + 36628 0.67 0.942858
Target:  5'- aGGCgGCCGuGCU-UCAGGUGcaugAGAGGGa -3'
miRNA:   3'- -UCGgUGGC-CGGuAGUCUAUa---UCUCUC- -5'
13410 3' -53 NC_003409.1 + 108702 0.67 0.942858
Target:  5'- aGGCCAUggCGGCCAUUAagcGGUuUAGGGAc -3'
miRNA:   3'- -UCGGUG--GCCGGUAGU---CUAuAUCUCUc -5'
13410 3' -53 NC_003409.1 + 68749 0.68 0.916086
Target:  5'- cGCCACCGGC-GUgAGAcUGUGGAcuGGGg -3'
miRNA:   3'- uCGGUGGCCGgUAgUCU-AUAUCU--CUC- -5'
13410 3' -53 NC_003409.1 + 111854 0.68 0.903588
Target:  5'- cGGCCACCgcgggggcGGCCGUUuccgucguGGAUG-AGAGGGu -3'
miRNA:   3'- -UCGGUGG--------CCGGUAG--------UCUAUaUCUCUC- -5'
13410 3' -53 NC_003409.1 + 92096 0.68 0.896961
Target:  5'- gGGCCGCCGGCCGUCGccuGaAUAUGacucGGAu -3'
miRNA:   3'- -UCGGUGGCCGGUAGU---C-UAUAUc---UCUc -5'
13410 3' -53 NC_003409.1 + 58426 0.7 0.826788
Target:  5'- cGCCACCGGCUucuUCAGAaAgcGGGGc -3'
miRNA:   3'- uCGGUGGCCGGu--AGUCUaUauCUCUc -5'
13410 3' -53 NC_003409.1 + 90436 0.72 0.700373
Target:  5'- cGCCGCCucGGCUGUCggggcGGGUGUAGAGGa -3'
miRNA:   3'- uCGGUGG--CCGGUAG-----UCUAUAUCUCUc -5'
13410 3' -53 NC_003409.1 + 85384 0.73 0.658341
Target:  5'- cAGCCACCuaGCCGUgAuAUAUAGAGAGc -3'
miRNA:   3'- -UCGGUGGc-CGGUAgUcUAUAUCUCUC- -5'
13410 3' -53 NC_003409.1 + 85185 1.1 0.003767
Target:  5'- gAGCCACCGGCCAUCAGAUAUAGAGAGg -3'
miRNA:   3'- -UCGGUGGCCGGUAGUCUAUAUCUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.