miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13410 5' -48.7 NC_003409.1 + 132227 0.66 0.998484
Target:  5'- -cCUCg----GUgAUGGCaUAGGUGGCc -3'
miRNA:   3'- gaGAGauauaUAgUGCCG-AUCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 23212 0.66 0.998168
Target:  5'- -cCUCcag--GUCACGccGCUAGGUGGg -3'
miRNA:   3'- gaGAGauauaUAGUGC--CGAUCCACCg -5'
13410 5' -48.7 NC_003409.1 + 15184 0.66 0.998168
Target:  5'- aUC-CcGUAUAcguUCGCGGCgAGGUGGa -3'
miRNA:   3'- gAGaGaUAUAU---AGUGCCGaUCCACCg -5'
13410 5' -48.7 NC_003409.1 + 119797 0.66 0.998168
Target:  5'- -cCUCcag--GUCACGccGCUAGGUGGg -3'
miRNA:   3'- gaGAGauauaUAGUGC--CGAUCCACCg -5'
13410 5' -48.7 NC_003409.1 + 18832 0.66 0.997719
Target:  5'- cCUCUCUAguugAUAUCcuuccacAgGGUUugccuggGGGUGGCu -3'
miRNA:   3'- -GAGAGAUa---UAUAG-------UgCCGA-------UCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 118857 0.67 0.995648
Target:  5'- -gCUUggc-UAaCACGGCUGGaGUGGCg -3'
miRNA:   3'- gaGAGauauAUaGUGCCGAUC-CACCG- -5'
13410 5' -48.7 NC_003409.1 + 53703 0.67 0.994055
Target:  5'- uUCUCgacGUGcGUgGgGGUUGGGUGGUa -3'
miRNA:   3'- gAGAGa--UAUaUAgUgCCGAUCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 87150 0.67 0.994055
Target:  5'- -gCUCUGccaccUCugGGgUGGGUGGUg -3'
miRNA:   3'- gaGAGAUauau-AGugCCgAUCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 51696 0.68 0.992022
Target:  5'- uUCUCUAUcUAUCucUGGU--GGUGGCu -3'
miRNA:   3'- gAGAGAUAuAUAGu-GCCGauCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 92412 0.7 0.977944
Target:  5'- -aCUCagGUAUGcugcCACGGaUUGGGUGGCg -3'
miRNA:   3'- gaGAGa-UAUAUa---GUGCC-GAUCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 118894 0.7 0.977944
Target:  5'- -cCUCUGg----CGCGGCcccgggaaaUGGGUGGCu -3'
miRNA:   3'- gaGAGAUauauaGUGCCG---------AUCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 107426 0.71 0.957847
Target:  5'- aCUCUCUAgccuUCGCGGUgggAgccuguugcaggagGGUGGCg -3'
miRNA:   3'- -GAGAGAUauauAGUGCCGa--U--------------CCACCG- -5'
13410 5' -48.7 NC_003409.1 + 103447 0.71 0.950775
Target:  5'- -gCUUUGcgauuguUGUCAUGGCUAcGGUGGCc -3'
miRNA:   3'- gaGAGAUau-----AUAGUGCCGAU-CCACCG- -5'
13410 5' -48.7 NC_003409.1 + 85349 0.77 0.732003
Target:  5'- cCUCUCUAUAUcUgAUGGCc-GGUGGCu -3'
miRNA:   3'- -GAGAGAUAUAuAgUGCCGauCCACCG- -5'
13410 5' -48.7 NC_003409.1 + 85219 1.13 0.007241
Target:  5'- gCUCUCUAUAUAUCACGGCUAGGUGGCu -3'
miRNA:   3'- -GAGAGAUAUAUAGUGCCGAUCCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.