miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13411 3' -57.9 NC_003409.1 + 44133 0.66 0.812318
Target:  5'- cGCCCCUGACugAGa--CGGau-GUCGa -3'
miRNA:   3'- -UGGGGACUGugUCaugGCCguuCGGC- -5'
13411 3' -57.9 NC_003409.1 + 21873 0.67 0.776269
Target:  5'- aGCgUCCUGGCAUAG-ACCGGaCAAGUg- -3'
miRNA:   3'- -UG-GGGACUGUGUCaUGGCC-GUUCGgc -5'
13411 3' -57.9 NC_003409.1 + 117722 0.67 0.757441
Target:  5'- uGCCCUgguUGACACAauGUGCCGcGCAucaaccAGCgCGa -3'
miRNA:   3'- -UGGGG---ACUGUGU--CAUGGC-CGU------UCG-GC- -5'
13411 3' -57.9 NC_003409.1 + 73143 0.67 0.756487
Target:  5'- cGCCCCUGAaaacuuuUACAGcaucACCGGUucuGCUGa -3'
miRNA:   3'- -UGGGGACU-------GUGUCa---UGGCCGuu-CGGC- -5'
13411 3' -57.9 NC_003409.1 + 109350 0.67 0.738172
Target:  5'- cGCCCCgGACGC-GUACCcaagggagguGGCGcuGGCCc -3'
miRNA:   3'- -UGGGGaCUGUGuCAUGG----------CCGU--UCGGc -5'
13411 3' -57.9 NC_003409.1 + 33630 0.67 0.738172
Target:  5'- uUCCCUGGCAUAaUACUGGCc-GCCc -3'
miRNA:   3'- uGGGGACUGUGUcAUGGCCGuuCGGc -5'
13411 3' -57.9 NC_003409.1 + 28080 0.67 0.728395
Target:  5'- gACCCCUGACuuggucguCGGUAuguugucuCCGcGCAAGCg- -3'
miRNA:   3'- -UGGGGACUGu-------GUCAU--------GGC-CGUUCGgc -5'
13411 3' -57.9 NC_003409.1 + 37292 0.67 0.728395
Target:  5'- -gCCCUGACAgAGUugUGGaccuccGCCGa -3'
miRNA:   3'- ugGGGACUGUgUCAugGCCguu---CGGC- -5'
13411 3' -57.9 NC_003409.1 + 131068 0.67 0.728395
Target:  5'- uCCCCUGGCGCuGgcguaGCUGGCcuggcAGCCu -3'
miRNA:   3'- uGGGGACUGUGuCa----UGGCCGu----UCGGc -5'
13411 3' -57.9 NC_003409.1 + 107485 0.68 0.718536
Target:  5'- gGCCCgCUGACugGGaUGCCcuGGCAGcggaguaccaacGCCGu -3'
miRNA:   3'- -UGGG-GACUGugUC-AUGG--CCGUU------------CGGC- -5'
13411 3' -57.9 NC_003409.1 + 17841 0.68 0.718536
Target:  5'- gACCUCUGuuACcGUACCGGCAucuGCa- -3'
miRNA:   3'- -UGGGGACugUGuCAUGGCCGUu--CGgc -5'
13411 3' -57.9 NC_003409.1 + 35955 0.68 0.678454
Target:  5'- cCCCCauUGACGCGucUGCCGGCcuaguuGCCGg -3'
miRNA:   3'- uGGGG--ACUGUGUc-AUGGCCGuu----CGGC- -5'
13411 3' -57.9 NC_003409.1 + 123726 0.68 0.668317
Target:  5'- uCCCCUGGCugGGUuaaUGGCAggGGCUu -3'
miRNA:   3'- uGGGGACUGugUCAug-GCCGU--UCGGc -5'
13411 3' -57.9 NC_003409.1 + 81334 0.69 0.658151
Target:  5'- cGCCCCcaacggcaaGGCGCAGUACgugCGGCGcGCCu -3'
miRNA:   3'- -UGGGGa--------CUGUGUCAUG---GCCGUuCGGc -5'
13411 3' -57.9 NC_003409.1 + 4727 0.69 0.656115
Target:  5'- uGCCCCUGACACAGgucacacauuugACUaGGU--GCCGc -3'
miRNA:   3'- -UGGGGACUGUGUCa-----------UGG-CCGuuCGGC- -5'
13411 3' -57.9 NC_003409.1 + 81398 0.69 0.637764
Target:  5'- uCCCCgGGcCACAGcGCCGGuCAugucGGCCGa -3'
miRNA:   3'- uGGGGaCU-GUGUCaUGGCC-GU----UCGGC- -5'
13411 3' -57.9 NC_003409.1 + 100599 0.69 0.61736
Target:  5'- gUCCCaUGguccaGCGCGGgaACCGGCAGGCCu -3'
miRNA:   3'- uGGGG-AC-----UGUGUCa-UGGCCGUUCGGc -5'
13411 3' -57.9 NC_003409.1 + 111983 0.72 0.469368
Target:  5'- gGCCCCcgGGCGUGGUGCCGGaugcaGGGCCu -3'
miRNA:   3'- -UGGGGa-CUGUGUCAUGGCCg----UUCGGc -5'
13411 3' -57.9 NC_003409.1 + 108579 0.72 0.460089
Target:  5'- aAUCCCUGGUACAGgaaGCgGaGCAGGCCGg -3'
miRNA:   3'- -UGGGGACUGUGUCa--UGgC-CGUUCGGC- -5'
13411 3' -57.9 NC_003409.1 + 108619 0.72 0.441829
Target:  5'- gGCCaCCauaGACACGGUgGCCGGCcAGGCCc -3'
miRNA:   3'- -UGG-GGa--CUGUGUCA-UGGCCG-UUCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.