Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13411 | 5' | -65.2 | NC_003409.1 | + | 87924 | 1.08 | 0.000452 |
Target: 5'- cUGCGGCUUGGGCGGCGCCGUGCCCGGu -3' miRNA: 3'- -ACGCCGAACCCGCCGCGGCACGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 132585 | 0.74 | 0.143606 |
Target: 5'- aUGCuGGCcgagaGGGUGGCGCCcagaGUGCCCGa -3' miRNA: 3'- -ACG-CCGaa---CCCGCCGCGG----CACGGGCc -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 133031 | 0.73 | 0.18656 |
Target: 5'- uUGCGGUgguGGCagagucgGGCGCgGUGCCUGGg -3' miRNA: 3'- -ACGCCGaacCCG-------CCGCGgCACGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 78447 | 0.71 | 0.236085 |
Target: 5'- aUGCGGCUaccGGGCuGCGCCa-GCCaCGGc -3' miRNA: 3'- -ACGCCGAa--CCCGcCGCGGcaCGG-GCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 5022 | 0.71 | 0.247114 |
Target: 5'- aUGCaacGUauacuGGCaGGCGCCGUGCCCGGu -3' miRNA: 3'- -ACGc--CGaac--CCG-CCGCGGCACGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 93662 | 0.71 | 0.247114 |
Target: 5'- gGCGGUggguugugUGGGCGGCGggauguaCGUGCagCGGg -3' miRNA: 3'- aCGCCGa-------ACCCGCCGCg------GCACGg-GCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 109849 | 0.7 | 0.289091 |
Target: 5'- cGCGGCggGaGGCGGUGgC--GCCCGGc -3' miRNA: 3'- aCGCCGaaC-CCGCCGCgGcaCGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 40967 | 0.69 | 0.30207 |
Target: 5'- cGUGGCUUGcauuaGGCGa-GCCGccGCCCGGg -3' miRNA: 3'- aCGCCGAAC-----CCGCcgCGGCa-CGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 105201 | 0.69 | 0.32168 |
Target: 5'- cGgGGgagUGGGCGGUggcucucugucagGCCGUGCUgGGg -3' miRNA: 3'- aCgCCga-ACCCGCCG-------------CGGCACGGgCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 115692 | 0.69 | 0.322373 |
Target: 5'- gGCugGGCUUugugGGGCGacuuGCGCCGcagaaugugGCCCGGg -3' miRNA: 3'- aCG--CCGAA----CCCGC----CGCGGCa--------CGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 119804 | 0.69 | 0.329363 |
Target: 5'- cGcCGGCgUGGGCGccGCGCgCGUGCUCu- -3' miRNA: 3'- aC-GCCGaACCCGC--CGCG-GCACGGGcc -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 26313 | 0.68 | 0.351 |
Target: 5'- gGUGGC-UGGGCuugucggcguGGCGuuGUGCaCCuGGa -3' miRNA: 3'- aCGCCGaACCCG----------CCGCggCACG-GG-CC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 10107 | 0.68 | 0.373628 |
Target: 5'- aUGCGGagggGGGCGGCGaugaCGUGggguuCCCGc -3' miRNA: 3'- -ACGCCgaa-CCCGCCGCg---GCAC-----GGGCc -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 72041 | 0.68 | 0.389254 |
Target: 5'- cGCGGUcugGGGUucugauuccaggGGCGCCGUGUggGGg -3' miRNA: 3'- aCGCCGaa-CCCG------------CCGCGGCACGggCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 118876 | 0.67 | 0.397226 |
Target: 5'- aGUGGCggUGGGCGGgGCCccuauaauCCUGGc -3' miRNA: 3'- aCGCCGa-ACCCGCCgCGGcac-----GGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 25931 | 0.67 | 0.405302 |
Target: 5'- cGCGGUUggccGGcGCGGCGUCGguaugGCaguaCGGu -3' miRNA: 3'- aCGCCGAa---CC-CGCCGCGGCa----CGg---GCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 24204 | 0.67 | 0.405302 |
Target: 5'- aGCGGU--GGGCGGgGCCccauccuCCCGGc -3' miRNA: 3'- aCGCCGaaCCCGCCgCGGcac----GGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 40540 | 0.67 | 0.405302 |
Target: 5'- cGCGGCcguucGGUGGCGCCaGUGCa-GGc -3' miRNA: 3'- aCGCCGaac--CCGCCGCGG-CACGggCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 53221 | 0.67 | 0.405302 |
Target: 5'- gUGUGGCUgcuguucuUGGGCguggacuacauGGCGUUcUGUCCGGg -3' miRNA: 3'- -ACGCCGA--------ACCCG-----------CCGCGGcACGGGCC- -5' |
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13411 | 5' | -65.2 | NC_003409.1 | + | 67810 | 0.67 | 0.438614 |
Target: 5'- gUGCGGCgcgcaGGG-GGCGCCacgaggGCCCu- -3' miRNA: 3'- -ACGCCGaa---CCCgCCGCGGca----CGGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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