miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13414 5' -50.3 NC_003409.1 + 68513 0.69 0.939903
Target:  5'- uUUGGCAggccgCG-CGGCUauGCUGGACCCa -3'
miRNA:   3'- uAACCGUa----GUaGUUGAc-CGACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 32296 0.69 0.939903
Target:  5'- -cUGGCAUCca-GGCUGGC-GGACaCCu -3'
miRNA:   3'- uaACCGUAGuagUUGACCGaCUUG-GG- -5'
13414 5' -50.3 NC_003409.1 + 31030 0.71 0.898306
Target:  5'- -gUGGC-UCA-CAugUGGCUGAGCa- -3'
miRNA:   3'- uaACCGuAGUaGUugACCGACUUGgg -5'
13414 5' -50.3 NC_003409.1 + 65041 0.72 0.863977
Target:  5'- uUUGGCAUCcgauGUCAugUugaggaugaacccggGGCUGGGCUCg -3'
miRNA:   3'- uAACCGUAG----UAGUugA---------------CCGACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 132664 0.75 0.696446
Target:  5'- --cGGCcUCAUCGcccaacagGCUGGCgugGGACCCc -3'
miRNA:   3'- uaaCCGuAGUAGU--------UGACCGa--CUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 57074 0.8 0.424439
Target:  5'- --gGGCGUcCGUCucuGgUGGCUGAACCCa -3'
miRNA:   3'- uaaCCGUA-GUAGu--UgACCGACUUGGG- -5'
13414 5' -50.3 NC_003409.1 + 90595 1.1 0.006702
Target:  5'- cAUUGGCAUCAUCAACUGGCUGAACCCc -3'
miRNA:   3'- -UAACCGUAGUAGUUGACCGACUUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.