miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13415 3' -60.1 NC_003409.1 + 19141 0.66 0.714894
Target:  5'- cGGGGGCAgCUCCaggcgaccaaaaugGCCccgcgggGGCAGCUc -3'
miRNA:   3'- -CCCCUGUgGGGGaa------------CGGaa-----CCGUCGA- -5'
13415 3' -60.1 NC_003409.1 + 115592 0.66 0.694119
Target:  5'- uGGGGugGggccgguggccuCCUCCUUGUCUguccugGGCAGg- -3'
miRNA:   3'- -CCCCugU------------GGGGGAACGGAa-----CCGUCga -5'
13415 3' -60.1 NC_003409.1 + 115756 0.66 0.693123
Target:  5'- cGGGACugcauccucuGCCUCCUcugcgagUGCCUUG-CGGCa -3'
miRNA:   3'- cCCCUG----------UGGGGGA-------ACGGAACcGUCGa -5'
13415 3' -60.1 NC_003409.1 + 30364 0.66 0.674124
Target:  5'- uGGGGGCGagCCCUgGCUauacugaccuUUGGCAGUUu -3'
miRNA:   3'- -CCCCUGUggGGGAaCGG----------AACCGUCGA- -5'
13415 3' -60.1 NC_003409.1 + 102993 0.67 0.633799
Target:  5'- aGGGAUgaGCCCggUUGCCgccucGGCAGCa -3'
miRNA:   3'- cCCCUG--UGGGggAACGGaa---CCGUCGa -5'
13415 3' -60.1 NC_003409.1 + 10182 0.67 0.633799
Target:  5'- -uGGAC-CCCCCgccGCC--GGCAGCa -3'
miRNA:   3'- ccCCUGuGGGGGaa-CGGaaCCGUCGa -5'
13415 3' -60.1 NC_003409.1 + 32876 0.67 0.623695
Target:  5'- cGGcGGGCuACUgCCUcGCCUUuuggGGCAGCg -3'
miRNA:   3'- -CC-CCUG-UGGgGGAaCGGAA----CCGUCGa -5'
13415 3' -60.1 NC_003409.1 + 12363 0.67 0.613597
Target:  5'- uGGGGACaugcgACCCCCUU-CCUgGGguGg- -3'
miRNA:   3'- -CCCCUG-----UGGGGGAAcGGAaCCguCga -5'
13415 3' -60.1 NC_003409.1 + 28641 0.68 0.583414
Target:  5'- uGGGACugCCCagucaCCUUGGCuGCc -3'
miRNA:   3'- cCCCUGugGGGgaac-GGAACCGuCGa -5'
13415 3' -60.1 NC_003409.1 + 92271 0.69 0.524131
Target:  5'- aGGGGAgGCCUCUggGaCUUGGgAGCa -3'
miRNA:   3'- -CCCCUgUGGGGGaaCgGAACCgUCGa -5'
13415 3' -60.1 NC_003409.1 + 102275 0.69 0.504861
Target:  5'- -cGGACACUauuucuaCCggUGCCUgGGCAGCUa -3'
miRNA:   3'- ccCCUGUGGg------GGa-ACGGAaCCGUCGA- -5'
13415 3' -60.1 NC_003409.1 + 131922 0.69 0.495341
Target:  5'- cGGGGugACCcuguaucuggauCCCUUGaCCUcGGCccAGCUg -3'
miRNA:   3'- -CCCCugUGG------------GGGAAC-GGAaCCG--UCGA- -5'
13415 3' -60.1 NC_003409.1 + 134329 0.7 0.431213
Target:  5'- cGGGGACACCCUCUguaGUCa-GGCuGCc -3'
miRNA:   3'- -CCCCUGUGGGGGAa--CGGaaCCGuCGa -5'
13415 3' -60.1 NC_003409.1 + 91588 1.1 0.000863
Target:  5'- aGGGGACACCCCCUUGCCUUGGCAGCUg -3'
miRNA:   3'- -CCCCUGUGGGGGAACGGAACCGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.