Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13416 | 5' | -59.4 | NC_003409.1 | + | 72510 | 0.66 | 0.744781 |
Target: 5'- aCCCugUCCgUCGCCaCCCUCaauccaGACUGCc- -3' miRNA: 3'- -GGG--AGG-AGUGGaGGGAGg-----CUGACGua -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 124881 | 0.66 | 0.744781 |
Target: 5'- cUCCUCCUgCugCUCcugcuCCUCCuGCUGCu- -3' miRNA: 3'- -GGGAGGA-GugGAG-----GGAGGcUGACGua -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 4898 | 0.67 | 0.675967 |
Target: 5'- cCCCUCCUCcUCUCUCUCCcuGAaggugGCAa -3' miRNA: 3'- -GGGAGGAGuGGAGGGAGG--CUga---CGUa -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 91970 | 0.68 | 0.645778 |
Target: 5'- uCCCUuugUCUUACCgCCCUCCGuuUUGCAc -3' miRNA: 3'- -GGGA---GGAGUGGaGGGAGGCu-GACGUa -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 118152 | 0.68 | 0.625586 |
Target: 5'- gCCCUCCUC-CCUCCUcacuccaaUCCcaaUGCAUg -3' miRNA: 3'- -GGGAGGAGuGGAGGG--------AGGcugACGUA- -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 126140 | 0.68 | 0.625585 |
Target: 5'- aUCCUCCUCGuCCUCCUcaUCUGucucCUGCu- -3' miRNA: 3'- -GGGAGGAGU-GGAGGG--AGGCu---GACGua -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 54544 | 0.68 | 0.615493 |
Target: 5'- -gUUCC-CACCUCUCUCCGGCgucuuugGCGg -3' miRNA: 3'- ggGAGGaGUGGAGGGAGGCUGa------CGUa -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 130133 | 0.69 | 0.585317 |
Target: 5'- aCCCcCCUUACCUUCCgcCUGGCUuGCAg -3' miRNA: 3'- -GGGaGGAGUGGAGGGa-GGCUGA-CGUa -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 69349 | 0.69 | 0.564359 |
Target: 5'- uCCCUUUUgACCUgcgugcgCUCUCCGGCUGCu- -3' miRNA: 3'- -GGGAGGAgUGGA-------GGGAGGCUGACGua -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 92837 | 1.07 | 0.001779 |
Target: 5'- cCCCUCCUCACCUCCCUCCGACUGCAUc -3' miRNA: 3'- -GGGAGGAGUGGAGGGAGGCUGACGUA- -5' |
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13416 | 5' | -59.4 | NC_003409.1 | + | 92664 | 1.07 | 0.001779 |
Target: 5'- cCCCUCCUCACCUCCCUCCGACUGCAUc -3' miRNA: 3'- -GGGAGGAGUGGAGGGAGGCUGACGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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