miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13417 5' -59.4 NC_003409.1 + 72510 0.66 0.744781
Target:  5'- aCCCugUCCgUCGCCaCCCUCaauccaGACUGCc- -3'
miRNA:   3'- -GGG--AGG-AGUGGaGGGAGg-----CUGACGua -5'
13417 5' -59.4 NC_003409.1 + 124881 0.66 0.744781
Target:  5'- cUCCUCCUgCugCUCcugcuCCUCCuGCUGCu- -3'
miRNA:   3'- -GGGAGGA-GugGAG-----GGAGGcUGACGua -5'
13417 5' -59.4 NC_003409.1 + 4898 0.67 0.675967
Target:  5'- cCCCUCCUCcUCUCUCUCCcuGAaggugGCAa -3'
miRNA:   3'- -GGGAGGAGuGGAGGGAGG--CUga---CGUa -5'
13417 5' -59.4 NC_003409.1 + 91970 0.68 0.645778
Target:  5'- uCCCUuugUCUUACCgCCCUCCGuuUUGCAc -3'
miRNA:   3'- -GGGA---GGAGUGGaGGGAGGCu-GACGUa -5'
13417 5' -59.4 NC_003409.1 + 118152 0.68 0.625586
Target:  5'- gCCCUCCUC-CCUCCUcacuccaaUCCcaaUGCAUg -3'
miRNA:   3'- -GGGAGGAGuGGAGGG--------AGGcugACGUA- -5'
13417 5' -59.4 NC_003409.1 + 126140 0.68 0.625585
Target:  5'- aUCCUCCUCGuCCUCCUcaUCUGucucCUGCu- -3'
miRNA:   3'- -GGGAGGAGU-GGAGGG--AGGCu---GACGua -5'
13417 5' -59.4 NC_003409.1 + 54544 0.68 0.615493
Target:  5'- -gUUCC-CACCUCUCUCCGGCgucuuugGCGg -3'
miRNA:   3'- ggGAGGaGUGGAGGGAGGCUGa------CGUa -5'
13417 5' -59.4 NC_003409.1 + 130133 0.69 0.585317
Target:  5'- aCCCcCCUUACCUUCCgcCUGGCUuGCAg -3'
miRNA:   3'- -GGGaGGAGUGGAGGGa-GGCUGA-CGUa -5'
13417 5' -59.4 NC_003409.1 + 69349 0.69 0.564359
Target:  5'- uCCCUUUUgACCUgcgugcgCUCUCCGGCUGCu- -3'
miRNA:   3'- -GGGAGGAgUGGA-------GGGAGGCUGACGua -5'
13417 5' -59.4 NC_003409.1 + 92837 1.07 0.001779
Target:  5'- cCCCUCCUCACCUCCCUCCGACUGCAUc -3'
miRNA:   3'- -GGGAGGAGUGGAGGGAGGCUGACGUA- -5'
13417 5' -59.4 NC_003409.1 + 92664 1.07 0.001779
Target:  5'- cCCCUCCUCACCUCCCUCCGACUGCAUc -3'
miRNA:   3'- -GGGAGGAGUGGAGGGAGGCUGACGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.