miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13418 5' -51.2 NC_003409.1 + 109313 0.66 0.992173
Target:  5'- gAGGaaACAA--GCGGCAGCCUCcaCGCc -3'
miRNA:   3'- -UCCagUGUUugUGCUGUUGGAGc-GCG- -5'
13418 5' -51.2 NC_003409.1 + 27044 0.66 0.991018
Target:  5'- uAGGcgCACGAugGCGuuGucGCCUCGaGCa -3'
miRNA:   3'- -UCCa-GUGUUugUGCugU--UGGAGCgCG- -5'
13418 5' -51.2 NC_003409.1 + 54786 0.66 0.991018
Target:  5'- gAGGUCcagccaaucuGCAGugGcCGGcCGGCCUUGCGg -3'
miRNA:   3'- -UCCAG----------UGUUugU-GCU-GUUGGAGCGCg -5'
13418 5' -51.2 NC_003409.1 + 69939 0.66 0.991018
Target:  5'- uGGUCACAucuCACGcauACGucGCCUuaccauguUGCGCa -3'
miRNA:   3'- uCCAGUGUuu-GUGC---UGU--UGGA--------GCGCG- -5'
13418 5' -51.2 NC_003409.1 + 19092 0.66 0.989733
Target:  5'- gAGGUCuauauGgAAACACuuCAACC-CGCGUg -3'
miRNA:   3'- -UCCAG-----UgUUUGUGcuGUUGGaGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 16649 0.66 0.989733
Target:  5'- uGGUCACGAGCccccagACgGGCGuuuCCU-GCGCa -3'
miRNA:   3'- uCCAGUGUUUG------UG-CUGUu--GGAgCGCG- -5'
13418 5' -51.2 NC_003409.1 + 102553 0.66 0.989733
Target:  5'- gAGG-CGCcguAC-CGGCaAACCUgGCGCg -3'
miRNA:   3'- -UCCaGUGuu-UGuGCUG-UUGGAgCGCG- -5'
13418 5' -51.2 NC_003409.1 + 87795 0.66 0.988157
Target:  5'- cAGGUaucCACGGGgACGuagaugGCAGCCagacccaUCGCGCa -3'
miRNA:   3'- -UCCA---GUGUUUgUGC------UGUUGG-------AGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 74720 0.66 0.986735
Target:  5'- ---aCGCAGGCACaGACGcCCUUGCGa -3'
miRNA:   3'- uccaGUGUUUGUG-CUGUuGGAGCGCg -5'
13418 5' -51.2 NC_003409.1 + 33644 0.66 0.986735
Target:  5'- cAGGUU-CAA--GCGGCGGuuugggugcCCUCGCGCg -3'
miRNA:   3'- -UCCAGuGUUugUGCUGUU---------GGAGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 14749 0.66 0.985003
Target:  5'- cAGGcgGCAAcGCGCGACGcauCgUCGCGCc -3'
miRNA:   3'- -UCCagUGUU-UGUGCUGUu--GgAGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 116868 0.66 0.985003
Target:  5'- -uGUCugAGGC-CGGgAGCCUUGgGCa -3'
miRNA:   3'- ucCAGugUUUGuGCUgUUGGAGCgCG- -5'
13418 5' -51.2 NC_003409.1 + 46424 0.66 0.985003
Target:  5'- cGGUcCACcAACAaccCGugGGCUUCGCaGCg -3'
miRNA:   3'- uCCA-GUGuUUGU---GCugUUGGAGCG-CG- -5'
13418 5' -51.2 NC_003409.1 + 51977 0.66 0.985003
Target:  5'- cGGGUCcgGCGuagcACGCGcCAGCCUC-UGCa -3'
miRNA:   3'- -UCCAG--UGUu---UGUGCuGUUGGAGcGCG- -5'
13418 5' -51.2 NC_003409.1 + 8141 0.66 0.985003
Target:  5'- aGGGUCugAGACAgGAUGuggcCCUgGUGUc -3'
miRNA:   3'- -UCCAGugUUUGUgCUGUu---GGAgCGCG- -5'
13418 5' -51.2 NC_003409.1 + 38380 0.66 0.985003
Target:  5'- cGGg-GCAAACugGcCAACUUCGUGg -3'
miRNA:   3'- uCCagUGUUUGugCuGUUGGAGCGCg -5'
13418 5' -51.2 NC_003409.1 + 90259 0.67 0.983105
Target:  5'- uGGGcCACGgaGACACGAgaGGCCUaccacgagGCGCa -3'
miRNA:   3'- -UCCaGUGU--UUGUGCUg-UUGGAg-------CGCG- -5'
13418 5' -51.2 NC_003409.1 + 52458 0.67 0.983105
Target:  5'- -cGUCGCGaggaAugGCGACAGgCaCGCGCu -3'
miRNA:   3'- ucCAGUGU----UugUGCUGUUgGaGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 82682 0.67 0.982704
Target:  5'- cGGGUCGCucgcuucggugcAGCGCGACAcuguccGCCcCGUGUu -3'
miRNA:   3'- -UCCAGUGu-----------UUGUGCUGU------UGGaGCGCG- -5'
13418 5' -51.2 NC_003409.1 + 108452 0.67 0.981031
Target:  5'- gAGGcCGCGGcuacGCACGGCGACgaCGCu- -3'
miRNA:   3'- -UCCaGUGUU----UGUGCUGUUGgaGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.