miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1342 5' -56.9 NC_001335.1 + 8075 0.66 0.644679
Target:  5'- aCGuCG-GCGCGGaacgCCAccacGUCGUagUGGGCg -3'
miRNA:   3'- -GCuGCuCGCGCCa---GGU----CAGCA--ACCUG- -5'
1342 5' -56.9 NC_001335.1 + 14821 0.66 0.633839
Target:  5'- gGACGGGCaGCGcagCCAGgucaUCGaUGGGCa -3'
miRNA:   3'- gCUGCUCG-CGCca-GGUC----AGCaACCUG- -5'
1342 5' -56.9 NC_001335.1 + 22559 0.66 0.622999
Target:  5'- uCGGCGggcucAGCGaCGGUCUGGUCcugGUcugGGACg -3'
miRNA:   3'- -GCUGC-----UCGC-GCCAGGUCAG---CAa--CCUG- -5'
1342 5' -56.9 NC_001335.1 + 49019 0.66 0.601349
Target:  5'- uGACGAGCcggucgauGCGGUCC--UCG-UGGAa -3'
miRNA:   3'- gCUGCUCG--------CGCCAGGucAGCaACCUg -5'
1342 5' -56.9 NC_001335.1 + 24387 0.66 0.601349
Target:  5'- cCGAC-AGCGCGGa--GGUCG-UGGAUg -3'
miRNA:   3'- -GCUGcUCGCGCCaggUCAGCaACCUG- -5'
1342 5' -56.9 NC_001335.1 + 42113 0.67 0.590559
Target:  5'- uGGCGAagGCGUGGgacUCGGUCGUcggcaaGGACg -3'
miRNA:   3'- gCUGCU--CGCGCCa--GGUCAGCAa-----CCUG- -5'
1342 5' -56.9 NC_001335.1 + 32868 0.67 0.579802
Target:  5'- cCGACG-GCGCGGUCuCAGgcucaGgagccgGGGCc -3'
miRNA:   3'- -GCUGCuCGCGCCAG-GUCag---Caa----CCUG- -5'
1342 5' -56.9 NC_001335.1 + 26631 0.68 0.537272
Target:  5'- gCGugGAGCGCGaGUC-GGUCGa-GGAg -3'
miRNA:   3'- -GCugCUCGCGC-CAGgUCAGCaaCCUg -5'
1342 5' -56.9 NC_001335.1 + 15773 0.68 0.510207
Target:  5'- gCGGCGAacgaacccggcuucgGUGUGGUCUucucuaGGUCGUcgGGACg -3'
miRNA:   3'- -GCUGCU---------------CGCGCCAGG------UCAGCAa-CCUG- -5'
1342 5' -56.9 NC_001335.1 + 4688 0.77 0.141326
Target:  5'- -cGCGAGCGCGGgCCAuGUCG-UGGACc -3'
miRNA:   3'- gcUGCUCGCGCCaGGU-CAGCaACCUG- -5'
1342 5' -56.9 NC_001335.1 + 7931 1.09 0.000693
Target:  5'- cCGACGAGCGCGGUCCAGUCGUUGGACu -3'
miRNA:   3'- -GCUGCUCGCGCCAGGUCAGCAACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.