miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13420 3' -57.4 NC_003409.1 + 88688 0.66 0.84002
Target:  5'- gCCgGCaggCAGGGGCGcGGGGGCug-Ca -3'
miRNA:   3'- aGGgUG---GUCCCCGCaUUCCCGuaaGa -5'
13420 3' -57.4 NC_003409.1 + 87155 0.66 0.832573
Target:  5'- -gCCACCucuGGGGUGgguggugcgccggcgGAGGGCGUg-- -3'
miRNA:   3'- agGGUGGu--CCCCGCa--------------UUCCCGUAaga -5'
13420 3' -57.4 NC_003409.1 + 113156 0.66 0.805817
Target:  5'- uUCCUuaGCCAGGGuaGCGacggUGGGGGC-UUCg -3'
miRNA:   3'- -AGGG--UGGUCCC--CGC----AUUCCCGuAAGa -5'
13420 3' -57.4 NC_003409.1 + 72052 0.66 0.796849
Target:  5'- gUUCUgauuCCAGGGGCGccgugUGGGGGUAUUg- -3'
miRNA:   3'- -AGGGu---GGUCCCCGC-----AUUCCCGUAAga -5'
13420 3' -57.4 NC_003409.1 + 22142 0.66 0.796849
Target:  5'- cCCCugCggucacGGGGGCGUGgauuuuuuGGGGUGUUg- -3'
miRNA:   3'- aGGGugG------UCCCCGCAU--------UCCCGUAAga -5'
13420 3' -57.4 NC_003409.1 + 14329 0.67 0.767187
Target:  5'- -gCUACCuGGGGCGUcgacgaacacguAGGGgAUUCUg -3'
miRNA:   3'- agGGUGGuCCCCGCAu-----------UCCCgUAAGA- -5'
13420 3' -57.4 NC_003409.1 + 68078 0.67 0.759566
Target:  5'- -gCUACCGGuuuGGGCGUAuGGGCccgUCUg -3'
miRNA:   3'- agGGUGGUC---CCCGCAUuCCCGua-AGA- -5'
13420 3' -57.4 NC_003409.1 + 77831 0.67 0.759566
Target:  5'- aUUCCACCcuGGGUagAGGGGCAgagUCg -3'
miRNA:   3'- -AGGGUGGucCCCGcaUUCCCGUa--AGa -5'
13420 3' -57.4 NC_003409.1 + 31671 0.67 0.759566
Target:  5'- gCCagGCCuaauGGGGUGUGGGGGCcagauGUUCc -3'
miRNA:   3'- aGGg-UGGu---CCCCGCAUUCCCG-----UAAGa -5'
13420 3' -57.4 NC_003409.1 + 84745 0.68 0.730378
Target:  5'- gUCCGCgAGGGGCGUAAcuGGUAUa-- -3'
miRNA:   3'- aGGGUGgUCCCCGCAUUc-CCGUAaga -5'
13420 3' -57.4 NC_003409.1 + 22802 0.69 0.659703
Target:  5'- --aCACCAGGGGCGgcGGaGGUugUCa -3'
miRNA:   3'- aggGUGGUCCCCGCauUC-CCGuaAGa -5'
13420 3' -57.4 NC_003409.1 + 46317 0.71 0.517629
Target:  5'- aCCC-CCGGGGGCGUGc-GGCGUg-- -3'
miRNA:   3'- aGGGuGGUCCCCGCAUucCCGUAaga -5'
13420 3' -57.4 NC_003409.1 + 121370 0.72 0.469538
Target:  5'- gUUCCACCAGGcGGCGUuguggccacGGGCgGUUCg -3'
miRNA:   3'- -AGGGUGGUCC-CCGCAuu-------CCCG-UAAGa -5'
13420 3' -57.4 NC_003409.1 + 96430 1.07 0.002244
Target:  5'- gUCCCACCAGGGGCGUAAGGGCAUUCUu -3'
miRNA:   3'- -AGGGUGGUCCCCGCAUUCCCGUAAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.