miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13420 5' -57.9 NC_003409.1 + 93555 0.66 0.828241
Target:  5'- gCCAGGaaacagGCGgCGGCaGUCgCCACGCc- -3'
miRNA:   3'- -GGUCU------UGCgGUCGaCAGgGGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 118648 0.66 0.828241
Target:  5'- gCAGuACcCCGGCgcgGUCCCC-CGCa- -3'
miRNA:   3'- gGUCuUGcGGUCGa--CAGGGGuGCGac -5'
13420 5' -57.9 NC_003409.1 + 55708 0.66 0.81979
Target:  5'- uUCAGGACGCaCAGCaugccGUCagggCCCACGgUGc -3'
miRNA:   3'- -GGUCUUGCG-GUCGa----CAG----GGGUGCgAC- -5'
13420 5' -57.9 NC_003409.1 + 74146 0.66 0.81979
Target:  5'- cCCAGGaugugcACGCCAcggaUGUCgCCACGuCUGa -3'
miRNA:   3'- -GGUCU------UGCGGUcg--ACAGgGGUGC-GAC- -5'
13420 5' -57.9 NC_003409.1 + 103518 0.66 0.811172
Target:  5'- uCCA--ACaCCAGCUgGUCCCCACGg-- -3'
miRNA:   3'- -GGUcuUGcGGUCGA-CAGGGGUGCgac -5'
13420 5' -57.9 NC_003409.1 + 86325 0.66 0.793461
Target:  5'- cCCAGAGuucCGCagCAGCUGUUCaacaCCGCGCg- -3'
miRNA:   3'- -GGUCUU---GCG--GUCGACAGG----GGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 102985 0.67 0.784387
Target:  5'- uCCAG-ACGCaCAG-UGUCCgCACGCc- -3'
miRNA:   3'- -GGUCuUGCG-GUCgACAGGgGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 9924 0.67 0.784387
Target:  5'- cUCAGGGCGaCAGCgGgaaCCCCACGUc- -3'
miRNA:   3'- -GGUCUUGCgGUCGaCa--GGGGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 11426 0.67 0.737165
Target:  5'- aCAGu-CGCCAaCUGUCCCCuCGgaGa -3'
miRNA:   3'- gGUCuuGCGGUcGACAGGGGuGCgaC- -5'
13420 5' -57.9 NC_003409.1 + 105554 0.68 0.727414
Target:  5'- aCCAGggUGcCCAGCgaUUCCUgacugGCGCUGg -3'
miRNA:   3'- -GGUCuuGC-GGUCGacAGGGG-----UGCGAC- -5'
13420 5' -57.9 NC_003409.1 + 109578 0.68 0.727414
Target:  5'- gCCAGAagcGCGUCuGUUuuUCCCCGCGCg- -3'
miRNA:   3'- -GGUCU---UGCGGuCGAc-AGGGGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 42459 0.68 0.717581
Target:  5'- uUCAGGgagcuACGCUcGCUGUaucuUCCCGCGCUa -3'
miRNA:   3'- -GGUCU-----UGCGGuCGACA----GGGGUGCGAc -5'
13420 5' -57.9 NC_003409.1 + 22585 0.68 0.67762
Target:  5'- cCCAG-GCGaCCAGggGUCgCCGCGCUu -3'
miRNA:   3'- -GGUCuUGC-GGUCgaCAGgGGUGCGAc -5'
13420 5' -57.9 NC_003409.1 + 119798 0.69 0.64723
Target:  5'- gCCAG-GCGCCGGCgUGggCgCCGCGCg- -3'
miRNA:   3'- -GGUCuUGCGGUCG-ACa-GgGGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 123710 0.7 0.566228
Target:  5'- cCCAGGACcUUGGUUuUCCCCugGCUGg -3'
miRNA:   3'- -GGUCUUGcGGUCGAcAGGGGugCGAC- -5'
13420 5' -57.9 NC_003409.1 + 87088 0.71 0.516849
Target:  5'- uCCAGu-CGCCAuGUUGUcCCCCugGCa- -3'
miRNA:   3'- -GGUCuuGCGGU-CGACA-GGGGugCGac -5'
13420 5' -57.9 NC_003409.1 + 79583 0.72 0.460039
Target:  5'- -aAGGACGUCGGCgaucGUCUCgGCGCUGu -3'
miRNA:   3'- ggUCUUGCGGUCGa---CAGGGgUGCGAC- -5'
13420 5' -57.9 NC_003409.1 + 40668 0.73 0.432899
Target:  5'- gCAGAcacCGCCAGCcGaUCCCCACGUa- -3'
miRNA:   3'- gGUCUu--GCGGUCGaC-AGGGGUGCGac -5'
13420 5' -57.9 NC_003409.1 + 107600 0.73 0.406715
Target:  5'- uCCuuGAACGCCuGCUGUaucuucUUCCACGCUGu -3'
miRNA:   3'- -GGu-CUUGCGGuCGACA------GGGGUGCGAC- -5'
13420 5' -57.9 NC_003409.1 + 13527 0.74 0.381548
Target:  5'- gCCGGAACGCCuAGCggGUCuCCUGCGgaGg -3'
miRNA:   3'- -GGUCUUGCGG-UCGa-CAG-GGGUGCgaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.