Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13420 | 5' | -57.9 | NC_003409.1 | + | 96468 | 1.11 | 0.001332 |
Target: 5'- cCCAGAACGCCAGCUGUCCCCACGCUGg -3' miRNA: 3'- -GGUCUUGCGGUCGACAGGGGUGCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 131228 | 0.75 | 0.304051 |
Target: 5'- gCCAGcuACGCCAGCgccaggggauggGUCCUgGCGCUGu -3' miRNA: 3'- -GGUCu-UGCGGUCGa-----------CAGGGgUGCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 13527 | 0.74 | 0.381548 |
Target: 5'- gCCGGAACGCCuAGCggGUCuCCUGCGgaGg -3' miRNA: 3'- -GGUCUUGCGG-UCGa-CAG-GGGUGCgaC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 21727 | 0.74 | 0.349645 |
Target: 5'- gCCAGGACGCuccCAGCgUGUCCCCAgauUGCa- -3' miRNA: 3'- -GGUCUUGCG---GUCG-ACAGGGGU---GCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 40668 | 0.73 | 0.432899 |
Target: 5'- gCAGAcacCGCCAGCcGaUCCCCACGUa- -3' miRNA: 3'- gGUCUu--GCGGUCGaC-AGGGGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 107600 | 0.73 | 0.406715 |
Target: 5'- uCCuuGAACGCCuGCUGUaucuucUUCCACGCUGu -3' miRNA: 3'- -GGu-CUUGCGGuCGACA------GGGGUGCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 79583 | 0.72 | 0.460039 |
Target: 5'- -aAGGACGUCGGCgaucGUCUCgGCGCUGu -3' miRNA: 3'- ggUCUUGCGGUCGa---CAGGGgUGCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 87088 | 0.71 | 0.516849 |
Target: 5'- uCCAGu-CGCCAuGUUGUcCCCCugGCa- -3' miRNA: 3'- -GGUCuuGCGGU-CGACA-GGGGugCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 123710 | 0.7 | 0.566228 |
Target: 5'- cCCAGGACcUUGGUUuUCCCCugGCUGg -3' miRNA: 3'- -GGUCUUGcGGUCGAcAGGGGugCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 119798 | 0.69 | 0.64723 |
Target: 5'- gCCAG-GCGCCGGCgUGggCgCCGCGCg- -3' miRNA: 3'- -GGUCuUGCGGUCG-ACa-GgGGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 42459 | 0.68 | 0.717581 |
Target: 5'- uUCAGGgagcuACGCUcGCUGUaucuUCCCGCGCUa -3' miRNA: 3'- -GGUCU-----UGCGGuCGACA----GGGGUGCGAc -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 22585 | 0.68 | 0.67762 |
Target: 5'- cCCAG-GCGaCCAGggGUCgCCGCGCUu -3' miRNA: 3'- -GGUCuUGC-GGUCgaCAGgGGUGCGAc -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 109578 | 0.68 | 0.727414 |
Target: 5'- gCCAGAagcGCGUCuGUUuuUCCCCGCGCg- -3' miRNA: 3'- -GGUCU---UGCGGuCGAc-AGGGGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 105554 | 0.68 | 0.727414 |
Target: 5'- aCCAGggUGcCCAGCgaUUCCUgacugGCGCUGg -3' miRNA: 3'- -GGUCuuGC-GGUCGacAGGGG-----UGCGAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 102985 | 0.67 | 0.784387 |
Target: 5'- uCCAG-ACGCaCAG-UGUCCgCACGCc- -3' miRNA: 3'- -GGUCuUGCG-GUCgACAGGgGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 9924 | 0.67 | 0.784387 |
Target: 5'- cUCAGGGCGaCAGCgGgaaCCCCACGUc- -3' miRNA: 3'- -GGUCUUGCgGUCGaCa--GGGGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 11426 | 0.67 | 0.737165 |
Target: 5'- aCAGu-CGCCAaCUGUCCCCuCGgaGa -3' miRNA: 3'- gGUCuuGCGGUcGACAGGGGuGCgaC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 74146 | 0.66 | 0.81979 |
Target: 5'- cCCAGGaugugcACGCCAcggaUGUCgCCACGuCUGa -3' miRNA: 3'- -GGUCU------UGCGGUcg--ACAGgGGUGC-GAC- -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 86325 | 0.66 | 0.793461 |
Target: 5'- cCCAGAGuucCGCagCAGCUGUUCaacaCCGCGCg- -3' miRNA: 3'- -GGUCUU---GCG--GUCGACAGG----GGUGCGac -5' |
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13420 | 5' | -57.9 | NC_003409.1 | + | 118648 | 0.66 | 0.828241 |
Target: 5'- gCAGuACcCCGGCgcgGUCCCC-CGCa- -3' miRNA: 3'- gGUCuUGcGGUCGa--CAGGGGuGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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