miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13421 5' -61.6 NC_003409.1 + 68423 0.66 0.653983
Target:  5'- gGGGGUC-GuCUGCG-AGGcGCUCCUUCa -3'
miRNA:   3'- -CCCCAGaC-GGCGCgUCC-UGAGGAGGa -5'
13421 5' -61.6 NC_003409.1 + 24478 0.66 0.644076
Target:  5'- uGGGGU--GCUGC-CGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGcGUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118383 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118360 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118337 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118314 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118429 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118452 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 118406 0.66 0.644076
Target:  5'- uGGGGUgcGCCGCGCcGGGUUCCUg-- -3'
miRNA:   3'- -CCCCAgaCGGCGCGuCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 11822 0.67 0.60443
Target:  5'- -cGGUCgGCCGUGUAGGuggUCUCCa -3'
miRNA:   3'- ccCCAGaCGGCGCGUCCugaGGAGGa -5'
13421 5' -61.6 NC_003409.1 + 115966 0.67 0.594549
Target:  5'- aGGGUCUGCaGCGCcuuGGGug-CCUCUg -3'
miRNA:   3'- cCCCAGACGgCGCG---UCCugaGGAGGa -5'
13421 5' -61.6 NC_003409.1 + 24718 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 24678 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 24638 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 24598 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 24558 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 24518 0.67 0.588633
Target:  5'- uGGGGUgCUGCCGgggcuccuggggugcUGcCGGGGCUCCUg-- -3'
miRNA:   3'- -CCCCA-GACGGC---------------GC-GUCCUGAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 108530 0.67 0.584695
Target:  5'- gGGGGgaagGCCGCGguGGAaUCCUg-- -3'
miRNA:   3'- -CCCCaga-CGGCGCguCCUgAGGAgga -5'
13421 5' -61.6 NC_003409.1 + 109539 0.68 0.526447
Target:  5'- -aGGUCagGUCGCGCGGGGCcagcgccaCCUCCc -3'
miRNA:   3'- ccCCAGa-CGGCGCGUCCUGa-------GGAGGa -5'
13421 5' -61.6 NC_003409.1 + 108712 0.69 0.434949
Target:  5'- aGGGuuuggauuuUCUGCCGC-CAGGAUUCCaCCg -3'
miRNA:   3'- cCCC---------AGACGGCGcGUCCUGAGGaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.