Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13422 | 3' | -55.8 | NC_003409.1 | + | 78274 | 0.73 | 0.479466 |
Target: 5'- cGGG-GCAGccgUGGC-UGGCGCAGCc -3' miRNA: 3'- aCUCgCGUCauaACCGcACCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 99480 | 1.12 | 0.001394 |
Target: 5'- cUGAGCGCAGUAUUGGCGUGGCGCAGCa -3' miRNA: 3'- -ACUCGCGUCAUAACCGCACCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 87167 | 0.68 | 0.782948 |
Target: 5'- gUGGGUGguGcgccGGCGgagGGCGUGGCc -3' miRNA: 3'- -ACUCGCguCauaaCCGCa--CCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 41990 | 0.68 | 0.782948 |
Target: 5'- gUGAGCGa-----UGGCacGGCGCAGCg -3' miRNA: 3'- -ACUCGCgucauaACCGcaCCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 109913 | 0.68 | 0.773485 |
Target: 5'- cGAGCGCcugGUcGGCcaGGCGCAGg -3' miRNA: 3'- aCUCGCGucaUAaCCGcaCCGCGUCg -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 25927 | 0.68 | 0.773485 |
Target: 5'- cGuuCGCGGU--UGGCc-GGCGCGGCg -3' miRNA: 3'- aCucGCGUCAuaACCGcaCCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 35366 | 0.66 | 0.860733 |
Target: 5'- gGAGCGgAcuc--GGUGgGGCGCGGCg -3' miRNA: 3'- aCUCGCgUcauaaCCGCaCCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 131258 | 0.67 | 0.841461 |
Target: 5'- -cGGCGCGGgga-GGUGgggcacgaaaacaGGCGCAGCu -3' miRNA: 3'- acUCGCGUCauaaCCGCa------------CCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 131053 | 0.68 | 0.779179 |
Target: 5'- -cAGCGcCAGgacccauccccUGGCGcUGGCGUAGCu -3' miRNA: 3'- acUCGC-GUCaua--------ACCGC-ACCGCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 123418 | 0.69 | 0.73142 |
Target: 5'- cGAGgGCGGguUAUUGGCaguugccauauagaGUGGCG-AGCg -3' miRNA: 3'- aCUCgCGUC--AUAACCG--------------CACCGCgUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 87390 | 0.71 | 0.631639 |
Target: 5'- cGGGCGCGGg---GGCGcUGG-GCGGUu -3' miRNA: 3'- aCUCGCGUCauaaCCGC-ACCgCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 133308 | 0.69 | 0.723389 |
Target: 5'- aGGGCGUugccaggAGUggUGGCGaUGGUGC-GCa -3' miRNA: 3'- aCUCGCG-------UCAuaACCGC-ACCGCGuCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 80417 | 0.68 | 0.801445 |
Target: 5'- cGAGCGguGcguuUAUUGGUGcGG-GCAGUc -3' miRNA: 3'- aCUCGCguC----AUAACCGCaCCgCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 126384 | 0.79 | 0.237576 |
Target: 5'- gGAGaUGUAGgcgGUUGGCGUGGCGgAGUa -3' miRNA: 3'- aCUC-GCGUCa--UAACCGCACCGCgUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 109728 | 0.68 | 0.76389 |
Target: 5'- aGAcGCGCuuc--UGGCGUGGCGaaguGGCg -3' miRNA: 3'- aCU-CGCGucauaACCGCACCGCg---UCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 114978 | 0.68 | 0.773485 |
Target: 5'- aGAGaCGCGGgggugGGUGUGGaGCAGg -3' miRNA: 3'- aCUC-GCGUCauaa-CCGCACCgCGUCg -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 50062 | 0.68 | 0.782948 |
Target: 5'- -aGGCGUccGGUAcUGGCGUgGGCGCcGUu -3' miRNA: 3'- acUCGCG--UCAUaACCGCA-CCGCGuCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 93665 | 0.68 | 0.782948 |
Target: 5'- cUGGGCGguGgGUU-GUGUGG-GCGGCg -3' miRNA: 3'- -ACUCGCguCaUAAcCGCACCgCGUCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 123166 | 0.66 | 0.875855 |
Target: 5'- uUGAGa--AGU--UGGCGUGGCGaacagaGGCa -3' miRNA: 3'- -ACUCgcgUCAuaACCGCACCGCg-----UCG- -5' |
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13422 | 3' | -55.8 | NC_003409.1 | + | 115626 | 0.67 | 0.844755 |
Target: 5'- cGGGUGCGGUggUGGUGUcuGUaaucugGCAGCa -3' miRNA: 3'- aCUCGCGUCAuaACCGCAc-CG------CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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