miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13422 3' -55.8 NC_003409.1 + 109913 0.68 0.773485
Target:  5'- cGAGCGCcugGUcGGCcaGGCGCAGg -3'
miRNA:   3'- aCUCGCGucaUAaCCGcaCCGCGUCg -5'
13422 3' -55.8 NC_003409.1 + 114978 0.68 0.773485
Target:  5'- aGAGaCGCGGgggugGGUGUGGaGCAGg -3'
miRNA:   3'- aCUC-GCGUCauaa-CCGCACCgCGUCg -5'
13422 3' -55.8 NC_003409.1 + 109728 0.68 0.76389
Target:  5'- aGAcGCGCuuc--UGGCGUGGCGaaguGGCg -3'
miRNA:   3'- aCU-CGCGucauaACCGCACCGCg---UCG- -5'
13422 3' -55.8 NC_003409.1 + 20917 0.68 0.754174
Target:  5'- cGGGUGUu---UUGGCGaGGCGUAGUg -3'
miRNA:   3'- aCUCGCGucauAACCGCaCCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 123418 0.69 0.73142
Target:  5'- cGAGgGCGGguUAUUGGCaguugccauauagaGUGGCG-AGCg -3'
miRNA:   3'- aCUCgCGUC--AUAACCG--------------CACCGCgUCG- -5'
13422 3' -55.8 NC_003409.1 + 133308 0.69 0.723389
Target:  5'- aGGGCGUugccaggAGUggUGGCGaUGGUGC-GCa -3'
miRNA:   3'- aCUCGCG-------UCAuaACCGC-ACCGCGuCG- -5'
13422 3' -55.8 NC_003409.1 + 87390 0.71 0.631639
Target:  5'- cGGGCGCGGg---GGCGcUGG-GCGGUu -3'
miRNA:   3'- aCUCGCGUCauaaCCGC-ACCgCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 113533 0.72 0.528705
Target:  5'- -aGGCGCAG-AUUuGUGcGGCGCAGCa -3'
miRNA:   3'- acUCGCGUCaUAAcCGCaCCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 54635 0.72 0.528705
Target:  5'- -uGGCGCAcccuuuUAUUGGCGUGGUGCAc- -3'
miRNA:   3'- acUCGCGUc-----AUAACCGCACCGCGUcg -5'
13422 3' -55.8 NC_003409.1 + 78274 0.73 0.479466
Target:  5'- cGGG-GCAGccgUGGC-UGGCGCAGCc -3'
miRNA:   3'- aCUCgCGUCauaACCGcACCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 52065 0.74 0.460401
Target:  5'- cGAGCGCcaug-UGGUgaGUGGCGCGGUc -3'
miRNA:   3'- aCUCGCGucauaACCG--CACCGCGUCG- -5'
13422 3' -55.8 NC_003409.1 + 126384 0.79 0.237576
Target:  5'- gGAGaUGUAGgcgGUUGGCGUGGCGgAGUa -3'
miRNA:   3'- aCUC-GCGUCa--UAACCGCACCGCgUCG- -5'
13422 3' -55.8 NC_003409.1 + 99480 1.12 0.001394
Target:  5'- cUGAGCGCAGUAUUGGCGUGGCGCAGCa -3'
miRNA:   3'- -ACUCGCGUCAUAACCGCACCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.