Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 114395 | 0.7 | 0.948959 |
Target: 5'- gGCGaCAGCGGGGUggggcuggcaaGGCCcccAAAGCGcgACa -3' miRNA: 3'- -CGC-GUCGCUCCA-----------UCGGu--UUUUGCa-UG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 121379 | 0.7 | 0.934427 |
Target: 5'- -gGCGGCGuuGUGGCCAcgGGCGg-- -3' miRNA: 3'- cgCGUCGCucCAUCGGUuuUUGCaug -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 72870 | 0.7 | 0.929055 |
Target: 5'- aUGCAGCGGGGUgagccugccuccAGCCAu--AUGUAa -3' miRNA: 3'- cGCGUCGCUCCA------------UCGGUuuuUGCAUg -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 57757 | 0.71 | 0.923418 |
Target: 5'- uGCGguGCGAGGaGGUggUGAAAACGuUGCu -3' miRNA: 3'- -CGCguCGCUCCaUCG--GUUUUUGC-AUG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 43537 | 0.71 | 0.911348 |
Target: 5'- uGgGCAGC-AGGUGGCCGgcguccugGAGACG-ACg -3' miRNA: 3'- -CgCGUCGcUCCAUCGGU--------UUUUGCaUG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 131259 | 0.73 | 0.83589 |
Target: 5'- gGCGCGGgGAGGUggGGCaCGAAAACagGCg -3' miRNA: 3'- -CGCGUCgCUCCA--UCG-GUUUUUGcaUG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 119802 | 0.73 | 0.83589 |
Target: 5'- gGCGcCGGCGuGGgcGCCGcgcGCGUGCu -3' miRNA: 3'- -CGC-GUCGCuCCauCGGUuuuUGCAUG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 99515 | 1.12 | 0.005585 |
Target: 5'- uGCGCAGCGAGGUAGCCAAAAACGUACu -3' miRNA: 3'- -CGCGUCGCUCCAUCGGUUUUUGCAUG- -5' |
|||||||
13422 | 5' | -50.1 | NC_003409.1 | + | 54662 | 0.66 | 0.995243 |
Target: 5'- gGUGacCAGU-AGGUAcGUCAAGGGCGUACa -3' miRNA: 3'- -CGC--GUCGcUCCAU-CGGUUUUUGCAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home