miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13422 5' -50.1 NC_003409.1 + 114395 0.7 0.948959
Target:  5'- gGCGaCAGCGGGGUggggcuggcaaGGCCcccAAAGCGcgACa -3'
miRNA:   3'- -CGC-GUCGCUCCA-----------UCGGu--UUUUGCa-UG- -5'
13422 5' -50.1 NC_003409.1 + 72870 0.7 0.929055
Target:  5'- aUGCAGCGGGGUgagccugccuccAGCCAu--AUGUAa -3'
miRNA:   3'- cGCGUCGCUCCA------------UCGGUuuuUGCAUg -5'
13422 5' -50.1 NC_003409.1 + 57757 0.71 0.923418
Target:  5'- uGCGguGCGAGGaGGUggUGAAAACGuUGCu -3'
miRNA:   3'- -CGCguCGCUCCaUCG--GUUUUUGC-AUG- -5'
13422 5' -50.1 NC_003409.1 + 43537 0.71 0.911348
Target:  5'- uGgGCAGC-AGGUGGCCGgcguccugGAGACG-ACg -3'
miRNA:   3'- -CgCGUCGcUCCAUCGGU--------UUUUGCaUG- -5'
13422 5' -50.1 NC_003409.1 + 131259 0.73 0.83589
Target:  5'- gGCGCGGgGAGGUggGGCaCGAAAACagGCg -3'
miRNA:   3'- -CGCGUCgCUCCA--UCG-GUUUUUGcaUG- -5'
13422 5' -50.1 NC_003409.1 + 119802 0.73 0.83589
Target:  5'- gGCGcCGGCGuGGgcGCCGcgcGCGUGCu -3'
miRNA:   3'- -CGC-GUCGCuCCauCGGUuuuUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 99515 1.12 0.005585
Target:  5'- uGCGCAGCGAGGUAGCCAAAAACGUACu -3'
miRNA:   3'- -CGCGUCGCUCCAUCGGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 54662 0.66 0.995243
Target:  5'- gGUGacCAGU-AGGUAcGUCAAGGGCGUACa -3'
miRNA:   3'- -CGC--GUCGcUCCAU-CGGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 94019 0.66 0.992537
Target:  5'- cGUGUAGCGAGGcaucuuuuUAGgCAAAAGCcacgACa -3'
miRNA:   3'- -CGCGUCGCUCC--------AUCgGUUUUUGca--UG- -5'
13422 5' -50.1 NC_003409.1 + 78290 0.67 0.990136
Target:  5'- gGCGCAGCccGGUAGCCGcauAUGc-- -3'
miRNA:   3'- -CGCGUCGcuCCAUCGGUuuuUGCaug -5'
13422 5' -50.1 NC_003409.1 + 107725 0.68 0.971202
Target:  5'- cGCuGguGCGAGcGcUGGCCGAcaagaucAGCGUGCa -3'
miRNA:   3'- -CG-CguCGCUC-C-AUCGGUUu------UUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 42004 0.67 0.987167
Target:  5'- gGCGCAGCGAGaccAGCUcuc--CGUGCc -3'
miRNA:   3'- -CGCGUCGCUCca-UCGGuuuuuGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 71733 0.66 0.991402
Target:  5'- gGCGguGCuuuucAGGagAGUUAGGGACGUGCu -3'
miRNA:   3'- -CGCguCGc----UCCa-UCGGUUUUUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 121379 0.7 0.934427
Target:  5'- -gGCGGCGuuGUGGCCAcgGGCGg-- -3'
miRNA:   3'- cgCGUCGCucCAUCGGUuuUUGCaug -5'
13422 5' -50.1 NC_003409.1 + 132371 0.67 0.988727
Target:  5'- uGUGUAG-GAGGuUGGCCAugGACGg-- -3'
miRNA:   3'- -CGCGUCgCUCC-AUCGGUuuUUGCaug -5'
13422 5' -50.1 NC_003409.1 + 43092 0.66 0.991402
Target:  5'- aGCgGCGGCGAGGgcGgucuCCAGAAACu--- -3'
miRNA:   3'- -CG-CGUCGCUCCauC----GGUUUUUGcaug -5'
13422 5' -50.1 NC_003409.1 + 84380 0.75 0.750431
Target:  5'- uGUGCAGUGGGGUcuccgGGCCAGGuauggcuacccAAUGUGCc -3'
miRNA:   3'- -CGCGUCGCUCCA-----UCGGUUU-----------UUGCAUG- -5'
13422 5' -50.1 NC_003409.1 + 45891 0.72 0.891282
Target:  5'- gGCGCc-CGGGGUGGCCugacAAGACGcgGCa -3'
miRNA:   3'- -CGCGucGCUCCAUCGGu---UUUUGCa-UG- -5'
13422 5' -50.1 NC_003409.1 + 52157 0.71 0.911349
Target:  5'- uCGCAcGgGGGGUGGCCuguGGCGUGu -3'
miRNA:   3'- cGCGU-CgCUCCAUCGGuuuUUGCAUg -5'
13422 5' -50.1 NC_003409.1 + 61602 0.66 0.995243
Target:  5'- -gGCAcucCGGGGUGGaaagguCCAAGAGCGUAUc -3'
miRNA:   3'- cgCGUc--GCUCCAUC------GGUUUUUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.