Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13423 | 3' | -58.7 | NC_003409.1 | + | 11862 | 0.66 | 0.790765 |
Target: 5'- gCCCUCCaGGCuGGCUUCGGUCg---- -3' miRNA: 3'- -GGGGGGaCCGuUUGAGGCCAGgagau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 94108 | 0.67 | 0.734424 |
Target: 5'- aCCCCaCUGGCAcguaGACUCUGuG-CCaUCUAa -3' miRNA: 3'- gGGGG-GACCGU----UUGAGGC-CaGG-AGAU- -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 3255 | 0.67 | 0.724676 |
Target: 5'- gCCCCCaCUGGUcc-CUgCGGguaCCUCUAu -3' miRNA: 3'- -GGGGG-GACCGuuuGAgGCCa--GGAGAU- -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 110972 | 0.67 | 0.695 |
Target: 5'- cCCCCCCggacugagGGCGAAggCCGGcgcCCUCc- -3' miRNA: 3'- -GGGGGGa-------CCGUUUgaGGCCa--GGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 35408 | 0.67 | 0.695 |
Target: 5'- gCCCaCCUGGCcaccuACcgCCGGcUCCUCa- -3' miRNA: 3'- gGGG-GGACCGuu---UGa-GGCC-AGGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 67661 | 0.68 | 0.674943 |
Target: 5'- uUCCCCUUGGUcuuCUCC-GUCCUCc- -3' miRNA: 3'- -GGGGGGACCGuuuGAGGcCAGGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 7257 | 0.68 | 0.64462 |
Target: 5'- aCCCCCgcaugcGGUGAGCcugUCCGGggCCUCUu -3' miRNA: 3'- gGGGGGa-----CCGUUUG---AGGCCa-GGAGAu -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 8089 | 0.69 | 0.593989 |
Target: 5'- cCUCCCCUGGCAGGaccugaCGGUCgaCUGu -3' miRNA: 3'- -GGGGGGACCGUUUgag---GCCAGgaGAU- -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 6132 | 0.69 | 0.573878 |
Target: 5'- aCCCCCCUGGUAGACaggCUGGUa----- -3' miRNA: 3'- -GGGGGGACCGUUUGa--GGCCAggagau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 45102 | 0.7 | 0.544031 |
Target: 5'- gCgCCCCUGGaCGAgaaugacuacaAC-CCGGUCCUCg- -3' miRNA: 3'- -GgGGGGACC-GUU-----------UGaGGCCAGGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 95718 | 0.7 | 0.544031 |
Target: 5'- gCCUCCCUcGGCAGACacagaUCGGUuuaCCUCUAa -3' miRNA: 3'- -GGGGGGA-CCGUUUGa----GGCCA---GGAGAU- -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 128701 | 0.7 | 0.514707 |
Target: 5'- aUCCCCacgcGGCAGcCUCaCGGUCCUCc- -3' miRNA: 3'- -GGGGGga--CCGUUuGAG-GCCAGGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 87103 | 0.72 | 0.449064 |
Target: 5'- gUCCCCCUGGCAGACguaCGGUaUUCc- -3' miRNA: 3'- -GGGGGGACCGUUUGag-GCCAgGAGau -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 36028 | 0.72 | 0.405115 |
Target: 5'- cCCCCCUUGGUAGAUguuuuuaaaaaUCCcuuuggGGUCCUCUu -3' miRNA: 3'- -GGGGGGACCGUUUG-----------AGG------CCAGGAGAu -5' |
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13423 | 3' | -58.7 | NC_003409.1 | + | 100981 | 1.09 | 0.001464 |
Target: 5'- aCCCCCCUGGCAAACUCCGGUCCUCUAg -3' miRNA: 3'- -GGGGGGACCGUUUGAGGCCAGGAGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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