miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13423 3' -58.7 NC_003409.1 + 11862 0.66 0.790765
Target:  5'- gCCCUCCaGGCuGGCUUCGGUCg---- -3'
miRNA:   3'- -GGGGGGaCCGuUUGAGGCCAGgagau -5'
13423 3' -58.7 NC_003409.1 + 94108 0.67 0.734424
Target:  5'- aCCCCaCUGGCAcguaGACUCUGuG-CCaUCUAa -3'
miRNA:   3'- gGGGG-GACCGU----UUGAGGC-CaGG-AGAU- -5'
13423 3' -58.7 NC_003409.1 + 3255 0.67 0.724676
Target:  5'- gCCCCCaCUGGUcc-CUgCGGguaCCUCUAu -3'
miRNA:   3'- -GGGGG-GACCGuuuGAgGCCa--GGAGAU- -5'
13423 3' -58.7 NC_003409.1 + 110972 0.67 0.695
Target:  5'- cCCCCCCggacugagGGCGAAggCCGGcgcCCUCc- -3'
miRNA:   3'- -GGGGGGa-------CCGUUUgaGGCCa--GGAGau -5'
13423 3' -58.7 NC_003409.1 + 35408 0.67 0.695
Target:  5'- gCCCaCCUGGCcaccuACcgCCGGcUCCUCa- -3'
miRNA:   3'- gGGG-GGACCGuu---UGa-GGCC-AGGAGau -5'
13423 3' -58.7 NC_003409.1 + 67661 0.68 0.674943
Target:  5'- uUCCCCUUGGUcuuCUCC-GUCCUCc- -3'
miRNA:   3'- -GGGGGGACCGuuuGAGGcCAGGAGau -5'
13423 3' -58.7 NC_003409.1 + 7257 0.68 0.64462
Target:  5'- aCCCCCgcaugcGGUGAGCcugUCCGGggCCUCUu -3'
miRNA:   3'- gGGGGGa-----CCGUUUG---AGGCCa-GGAGAu -5'
13423 3' -58.7 NC_003409.1 + 8089 0.69 0.593989
Target:  5'- cCUCCCCUGGCAGGaccugaCGGUCgaCUGu -3'
miRNA:   3'- -GGGGGGACCGUUUgag---GCCAGgaGAU- -5'
13423 3' -58.7 NC_003409.1 + 6132 0.69 0.573878
Target:  5'- aCCCCCCUGGUAGACaggCUGGUa----- -3'
miRNA:   3'- -GGGGGGACCGUUUGa--GGCCAggagau -5'
13423 3' -58.7 NC_003409.1 + 45102 0.7 0.544031
Target:  5'- gCgCCCCUGGaCGAgaaugacuacaAC-CCGGUCCUCg- -3'
miRNA:   3'- -GgGGGGACC-GUU-----------UGaGGCCAGGAGau -5'
13423 3' -58.7 NC_003409.1 + 95718 0.7 0.544031
Target:  5'- gCCUCCCUcGGCAGACacagaUCGGUuuaCCUCUAa -3'
miRNA:   3'- -GGGGGGA-CCGUUUGa----GGCCA---GGAGAU- -5'
13423 3' -58.7 NC_003409.1 + 128701 0.7 0.514707
Target:  5'- aUCCCCacgcGGCAGcCUCaCGGUCCUCc- -3'
miRNA:   3'- -GGGGGga--CCGUUuGAG-GCCAGGAGau -5'
13423 3' -58.7 NC_003409.1 + 87103 0.72 0.449064
Target:  5'- gUCCCCCUGGCAGACguaCGGUaUUCc- -3'
miRNA:   3'- -GGGGGGACCGUUUGag-GCCAgGAGau -5'
13423 3' -58.7 NC_003409.1 + 36028 0.72 0.405115
Target:  5'- cCCCCCUUGGUAGAUguuuuuaaaaaUCCcuuuggGGUCCUCUu -3'
miRNA:   3'- -GGGGGGACCGUUUG-----------AGG------CCAGGAGAu -5'
13423 3' -58.7 NC_003409.1 + 100981 1.09 0.001464
Target:  5'- aCCCCCCUGGCAAACUCCGGUCCUCUAg -3'
miRNA:   3'- -GGGGGGACCGUUUGAGGCCAGGAGAU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.