Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 102652 | 0.66 | 0.999922 |
|
Target: 5'- gCAUGAguuGCGagg-GCAGCGCGgcGUACa -3' miRNA: 3'- -GUAUU---UGUgaaaCGUCGCGCa-CAUGc -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 93659 | 0.66 | 0.999897 |
|
Target: 5'- gGUGggUugUguggGCGGCGgGaUGUACGu -3' miRNA: 3'- gUAUuuGugAaa--CGUCGCgC-ACAUGC- -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 84002 | 0.66 | 0.999897 |
|
Target: 5'- ---cGAgACUUUGCGGCGag-GUGCa -3' miRNA: 3'- guauUUgUGAAACGUCGCgcaCAUGc -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 43857 | 0.67 | 0.999531 |
|
Target: 5'- cCAUugaaAgUUUGCAGCGCaUGUACa -3' miRNA: 3'- -GUAuuugUgAAACGUCGCGcACAUGc -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 20733 | 0.68 | 0.999091 |
|
Target: 5'- --gAGGCACUUUGgGGCG-GcGUACGu -3' miRNA: 3'- guaUUUGUGAAACgUCGCgCaCAUGC- -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 38858 | 0.68 | 0.998631 |
|
Target: 5'- -uUAAGCuauCgaggUGCAGCGCGUGgagcaauucUGCGa -3' miRNA: 3'- guAUUUGu--Gaa--ACGUCGCGCAC---------AUGC- -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 108101 | 0.69 | 0.996559 |
|
Target: 5'- --gGGACG---UGUGGCGUGUGUGCGu -3' miRNA: 3'- guaUUUGUgaaACGUCGCGCACAUGC- -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 10222 | 0.72 | 0.972974 |
|
Target: 5'- uCGUAGGCAaacUGCAGCuGCGUGUAa- -3' miRNA: 3'- -GUAUUUGUgaaACGUCG-CGCACAUgc -5' |
|||||||
| 13425 | 3' | -46.5 | NC_003409.1 | + | 102466 | 1.09 | 0.020154 |
|
Target: 5'- cCAUAAACACUUUGCAGCGCGUGUACGc -3' miRNA: 3'- -GUAUUUGUGAAACGUCGCGCACAUGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home