miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13426 3' -50 NC_003409.1 + 74626 0.66 0.993771
Target:  5'- -aGCGGGCGUc---GCCGAG-GUCGCc -3'
miRNA:   3'- aaCGUCUGCGcaaaUGGUUCuCAGUG- -5'
13426 3' -50 NC_003409.1 + 70283 0.66 0.992771
Target:  5'- --aCGGGC-CGUgUGCaCAAGGGUCACg -3'
miRNA:   3'- aacGUCUGcGCAaAUG-GUUCUCAGUG- -5'
13426 3' -50 NC_003409.1 + 51801 0.66 0.992771
Target:  5'- -gGCAGGaaaUGCGcagUACCGAGAuGUCAa -3'
miRNA:   3'- aaCGUCU---GCGCaa-AUGGUUCU-CAGUg -5'
13426 3' -50 NC_003409.1 + 54454 0.66 0.99039
Target:  5'- cUUGCAGAUGCGgugugUGCgCGAGGacgCGCa -3'
miRNA:   3'- -AACGUCUGCGCaa---AUG-GUUCUca-GUG- -5'
13426 3' -50 NC_003409.1 + 49208 0.67 0.985714
Target:  5'- -cGCAGGCGCcuaugACUAGGAGgaagagCACu -3'
miRNA:   3'- aaCGUCUGCGcaaa-UGGUUCUCa-----GUG- -5'
13426 3' -50 NC_003409.1 + 67326 0.67 0.979468
Target:  5'- -aGgGGugGCGUggagGCCAGGAugcggguuggGUCGCu -3'
miRNA:   3'- aaCgUCugCGCAaa--UGGUUCU----------CAGUG- -5'
13426 3' -50 NC_003409.1 + 8750 0.68 0.976992
Target:  5'- -cGCAGGCGCGgcgcACUcgAGGGGUgACa -3'
miRNA:   3'- aaCGUCUGCGCaaa-UGG--UUCUCAgUG- -5'
13426 3' -50 NC_003409.1 + 133297 0.68 0.974022
Target:  5'- -aGCAGACugccaggGCG-UUGCCAGGAGUgGu -3'
miRNA:   3'- aaCGUCUG-------CGCaAAUGGUUCUCAgUg -5'
13426 3' -50 NC_003409.1 + 91090 0.69 0.95738
Target:  5'- cUGguGGUGCGUUcaUGCCAGGAcUCACc -3'
miRNA:   3'- aACguCUGCGCAA--AUGGUUCUcAGUG- -5'
13426 3' -50 NC_003409.1 + 49462 0.69 0.95738
Target:  5'- -cGCGGACcUGUUcUACCAGGuaGGUCACc -3'
miRNA:   3'- aaCGUCUGcGCAA-AUGGUUC--UCAGUG- -5'
13426 3' -50 NC_003409.1 + 106786 0.69 0.953251
Target:  5'- cUGguGAgGCGUUcACCGGGGGccCGCa -3'
miRNA:   3'- aACguCUgCGCAAaUGGUUCUCa-GUG- -5'
13426 3' -50 NC_003409.1 + 121704 0.7 0.934086
Target:  5'- -aGCGGAUGUGUUUugCccaaacacGAGGGUUGCa -3'
miRNA:   3'- aaCGUCUGCGCAAAugG--------UUCUCAGUG- -5'
13426 3' -50 NC_003409.1 + 52584 0.71 0.89011
Target:  5'- -aGCAGGCGUGgcgGCCAAGGGgCGg -3'
miRNA:   3'- aaCGUCUGCGCaaaUGGUUCUCaGUg -5'
13426 3' -50 NC_003409.1 + 102717 1.08 0.009509
Target:  5'- uUUGCAGACGCGUUUACCAAGAGUCACu -3'
miRNA:   3'- -AACGUCUGCGCAAAUGGUUCUCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.