Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13427 | 3' | -57.5 | NC_003409.1 | + | 40529 | 0.67 | 0.810401 |
Target: 5'- aCCUCucCGGCGGuGgCGGCCaUGGugGg -3' miRNA: 3'- -GGAGcaGCUGUCuCgGUCGG-ACCugC- -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 66737 | 0.67 | 0.792801 |
Target: 5'- aCCaaagUGUCGGCgugccAGGGCCAGCCUGuuGCa -3' miRNA: 3'- -GGa---GCAGCUG-----UCUCGGUCGGACc-UGc -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 94795 | 0.68 | 0.755981 |
Target: 5'- aCCUCG-CGccuACAGuGGCCcaGGCCUGGAa- -3' miRNA: 3'- -GGAGCaGC---UGUC-UCGG--UCGGACCUgc -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 50568 | 0.68 | 0.746489 |
Target: 5'- -aUCGUaUGGguGAGCCAGuggauCCUGGACa -3' miRNA: 3'- ggAGCA-GCUguCUCGGUC-----GGACCUGc -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 32119 | 0.68 | 0.735934 |
Target: 5'- gCUCuGgccaCGugGGAgguguccGCCAGCCUGGAUGc -3' miRNA: 3'- gGAG-Ca---GCugUCU-------CGGUCGGACCUGC- -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 132663 | 0.69 | 0.677805 |
Target: 5'- aCCaUCG--GACAGcGCCAGCCagggGGACGg -3' miRNA: 3'- -GG-AGCagCUGUCuCGGUCGGa---CCUGC- -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 7567 | 0.69 | 0.667779 |
Target: 5'- --gCGUCGACcuGGCCGgauGCUUGGGCGa -3' miRNA: 3'- ggaGCAGCUGucUCGGU---CGGACCUGC- -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 12023 | 0.7 | 0.657724 |
Target: 5'- --gCG-CGACcGaAGCCAGCCUGGAgGg -3' miRNA: 3'- ggaGCaGCUGuC-UCGGUCGGACCUgC- -5' |
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13427 | 3' | -57.5 | NC_003409.1 | + | 104035 | 1.11 | 0.001609 |
Target: 5'- cCCUCGUCGACAGAGCCAGCCUGGACGa -3' miRNA: 3'- -GGAGCAGCUGUCUCGGUCGGACCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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