Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13428 | 3' | -50 | NC_003409.1 | + | 49283 | 0.69 | 0.974507 |
Target: 5'- aCGCCaCGGUgGCccugccuAGugGGguGGCGCGCCa -3' miRNA: 3'- -GUGG-GUUAgUGu------UCugCU--UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 32047 | 0.68 | 0.983772 |
Target: 5'- uCAUCaguAUC-UAAGuCGGAGCGCGCCc -3' miRNA: 3'- -GUGGgu-UAGuGUUCuGCUUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 37479 | 0.68 | 0.979527 |
Target: 5'- uGCCCGggCACcuuGGCGGAuuugggaucaacGCGCGUCu -3' miRNA: 3'- gUGGGUuaGUGuu-CUGCUU------------UGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 109474 | 0.68 | 0.981742 |
Target: 5'- -uCCCGugggCcCAAGACG--GCGCGCCc -3' miRNA: 3'- guGGGUua--GuGUUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 121278 | 0.68 | 0.979527 |
Target: 5'- aGCCCGcUCAUAAGACcauAACcugGUGCCa -3' miRNA: 3'- gUGGGUuAGUGUUCUGcu-UUG---CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 14379 | 0.68 | 0.987315 |
Target: 5'- aCGCCCuAGUgACucAGACGcggAAACaGCGCCu -3' miRNA: 3'- -GUGGG-UUAgUGu-UCUGC---UUUG-CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 20416 | 0.68 | 0.983772 |
Target: 5'- aCAUaacaAGUgACAGGGCGGAA-GCGCCa -3' miRNA: 3'- -GUGgg--UUAgUGUUCUGCUUUgCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 110975 | 0.68 | 0.981742 |
Target: 5'- -cCCCGGaCugAGGGCGAAGgccgGCGCCc -3' miRNA: 3'- guGGGUUaGugUUCUGCUUUg---CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 111200 | 0.68 | 0.985627 |
Target: 5'- gCACCC-GUCAUucGAguAAugGCGCCc -3' miRNA: 3'- -GUGGGuUAGUGuuCUgcUUugCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 51875 | 0.68 | 0.987315 |
Target: 5'- gGCCUucuccgCGCAGGgucaGCGGAGacCGCGCCa -3' miRNA: 3'- gUGGGuua---GUGUUC----UGCUUU--GCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 134207 | 0.68 | 0.987315 |
Target: 5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3' miRNA: 3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 40591 | 0.67 | 0.993586 |
Target: 5'- aGgCUAGUCuaguAgAGGGCGcgGCGCGCCu -3' miRNA: 3'- gUgGGUUAG----UgUUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 21540 | 0.67 | 0.988845 |
Target: 5'- -uCCCAAUUACAGGagaacaGCGAAcgGCGCGg- -3' miRNA: 3'- guGGGUUAGUGUUC------UGCUU--UGCGCgg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 109260 | 0.67 | 0.988845 |
Target: 5'- gACCCcGUC-CAGGcACGggGCcCGCUa -3' miRNA: 3'- gUGGGuUAGuGUUC-UGCuuUGcGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 113594 | 0.67 | 0.988845 |
Target: 5'- cCGCCC-GUCGCu-GGCGcAGGCGauCGCCg -3' miRNA: 3'- -GUGGGuUAGUGuuCUGC-UUUGC--GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 26008 | 0.67 | 0.991355 |
Target: 5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3' miRNA: 3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 24751 | 0.67 | 0.990229 |
Target: 5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3' miRNA: 3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 27219 | 0.67 | 0.991474 |
Target: 5'- gGCCCAAcugCuCGAGGCGAcAACgccaucguGCGCCu -3' miRNA: 3'- gUGGGUUa--GuGUUCUGCU-UUG--------CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 47742 | 0.67 | 0.991474 |
Target: 5'- aCACCUcuGUCAgAGGAUGccuguCGUGCCg -3' miRNA: 3'- -GUGGGu-UAGUgUUCUGCuuu--GCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 60619 | 0.67 | 0.993954 |
Target: 5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3' miRNA: 3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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