Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13428 | 3' | -50 | NC_003409.1 | + | 101610 | 0.66 | 0.996498 |
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Target: 5'- uUAUUCAgggugucGUCGgAGGugGGuGGCGCGCCg -3' miRNA: 3'- -GUGGGU-------UAGUgUUCugCU-UUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 87720 | 0.66 | 0.996555 |
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Target: 5'- gCACUUucucCGgGAGACcAGACGCGCCc -3' miRNA: 3'- -GUGGGuua-GUgUUCUGcUUUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 23395 | 0.66 | 0.996555 |
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Target: 5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3' miRNA: 3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 88075 | 0.66 | 0.996555 |
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Target: 5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3' miRNA: 3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 119614 | 0.66 | 0.996555 |
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Target: 5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3' miRNA: 3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 18888 | 0.66 | 0.996555 |
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Target: 5'- uGCCCAGUCGgGcGAUGggGCuuauaGUGUCu -3' miRNA: 3'- gUGGGUUAGUgUuCUGCuuUG-----CGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 81544 | 0.66 | 0.996776 |
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Target: 5'- gGCCCGgggagugauggagcaGuUCGCGAaGCGuaaAGGCGCGCCg -3' miRNA: 3'- gUGGGU---------------U-AGUGUUcUGC---UUUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 102005 | 0.66 | 0.997085 |
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Target: 5'- aCACCCGGUagau-GGCGAgGGCGCGUUc -3' miRNA: 3'- -GUGGGUUAguguuCUGCU-UUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 2346 | 0.66 | 0.997085 |
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Target: 5'- aCACCCAAUUAUAAuACu-AACGCaCCg -3' miRNA: 3'- -GUGGGUUAGUGUUcUGcuUUGCGcGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 51033 | 0.66 | 0.997085 |
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Target: 5'- gACgCAuAUCACGGGAUGcuAGCGUGUCu -3' miRNA: 3'- gUGgGU-UAGUGUUCUGCu-UUGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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