miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 113714 0.69 0.968331
Target:  5'- gGCCCAc-CGCGuguucgaGGGCGAGaaugGCGUGCCa -3'
miRNA:   3'- gUGGGUuaGUGU-------UCUGCUU----UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 114435 0.69 0.965382
Target:  5'- aCACCCGcaGUCAauCAGGGCcgugccCGCGCCu -3'
miRNA:   3'- -GUGGGU--UAGU--GUUCUGcuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 87909 0.69 0.965382
Target:  5'- -uUCCuGUCACGGGAUGGuggccucagGGCGCGUCu -3'
miRNA:   3'- guGGGuUAGUGUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 7731 0.69 0.965382
Target:  5'- uCGCCCAAgCAUccGGCcaGGucGACGCGCCu -3'
miRNA:   3'- -GUGGGUUaGUGuuCUG--CU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 106105 0.7 0.958153
Target:  5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3'
miRNA:   3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5'
13428 3' -50 NC_003409.1 + 127377 0.7 0.958153
Target:  5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3'
miRNA:   3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 14679 0.7 0.949951
Target:  5'- -uCCCAGUCACcuAGGAUGA-ACGuUGCCu -3'
miRNA:   3'- guGGGUUAGUG--UUCUGCUuUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 113466 0.7 0.949951
Target:  5'- uGCCCAGgcCGCcgaccaugcuAGGGCGAuacCGCGCCa -3'
miRNA:   3'- gUGGGUUa-GUG----------UUCUGCUuu-GCGCGG- -5'
13428 3' -50 NC_003409.1 + 52164 0.71 0.941228
Target:  5'- aGCUCAGUCGCAcgggggguggccuguGGCGuguGCGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGUu--------------CUGCuu-UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 127654 0.71 0.940743
Target:  5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3'
miRNA:   3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5'
13428 3' -50 NC_003409.1 + 81337 0.71 0.935755
Target:  5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3'
miRNA:   3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 74073 0.71 0.924999
Target:  5'- uCGCCCGAggcuUCugGuuGGGCGAgcgccgggaggAACGCGCUg -3'
miRNA:   3'- -GUGGGUU----AGugU--UCUGCU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 97196 0.71 0.91923
Target:  5'- aACCCAGUCACGcAGAgGuccAgGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGU-UCUgCuu-UgCGCGG- -5'
13428 3' -50 NC_003409.1 + 109849 0.72 0.913203
Target:  5'- gGCCCA--CAcCAAGACGGcuauGCGCGCg -3'
miRNA:   3'- gUGGGUuaGU-GUUCUGCUu---UGCGCGg -5'
13428 3' -50 NC_003409.1 + 109836 0.72 0.906917
Target:  5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3'
miRNA:   3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5'
13428 3' -50 NC_003409.1 + 43460 0.72 0.906917
Target:  5'- uCGCCCAgcGUCuuuaaaauaaagACGGGugG-AGCGUGCCg -3'
miRNA:   3'- -GUGGGU--UAG------------UGUUCugCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 761 0.72 0.906275
Target:  5'- gCGCCCAAaaACAuauacgauuugacAGGCGAGACGacaGCCc -3'
miRNA:   3'- -GUGGGUUagUGU-------------UCUGCUUUGCg--CGG- -5'
13428 3' -50 NC_003409.1 + 26955 0.72 0.900376
Target:  5'- gAUCCGGagGgaaggaAGGGCGggGCGCGCCg -3'
miRNA:   3'- gUGGGUUagUg-----UUCUGCuuUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.