miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 52164 0.71 0.941228
Target:  5'- aGCUCAGUCGCAcgggggguggccuguGGCGuguGCGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGUu--------------CUGCuu-UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 60619 0.67 0.993954
Target:  5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3'
miRNA:   3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5'
13428 3' -50 NC_003409.1 + 74073 0.71 0.924999
Target:  5'- uCGCCCGAggcuUCugGuuGGGCGAgcgccgggaggAACGCGCUg -3'
miRNA:   3'- -GUGGGUU----AGugU--UCUGCU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 74251 0.73 0.879251
Target:  5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3'
miRNA:   3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5'
13428 3' -50 NC_003409.1 + 75375 0.72 0.900376
Target:  5'- gACgCAggCACGGGGCGAccUGCGCCc -3'
miRNA:   3'- gUGgGUuaGUGUUCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 75674 0.66 0.995948
Target:  5'- gCAgCCAgcGUCGCca-ACG-GACGCGCCa -3'
miRNA:   3'- -GUgGGU--UAGUGuucUGCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 76441 0.73 0.855975
Target:  5'- uUACCCAAUUGCGAGGgauuacaguUGAAACGUGUa -3'
miRNA:   3'- -GUGGGUUAGUGUUCU---------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 81001 0.72 0.893582
Target:  5'- aGCCUGucCACcGGACGAGugGCGCg -3'
miRNA:   3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5'
13428 3' -50 NC_003409.1 + 81337 0.71 0.935755
Target:  5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3'
miRNA:   3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 81544 0.66 0.996776
Target:  5'- gGCCCGgggagugauggagcaGuUCGCGAaGCGuaaAGGCGCGCCg -3'
miRNA:   3'- gUGGGU---------------U-AGUGUUcUGC---UUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 83850 0.66 0.994389
Target:  5'- uCGCCgCAAagucUCGCgGGGACGggGCGUggggcucuaacuuGCCa -3'
miRNA:   3'- -GUGG-GUU----AGUG-UUCUGCuuUGCG-------------CGG- -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87720 0.66 0.996555
Target:  5'- gCACUUucucCGgGAGACcAGACGCGCCc -3'
miRNA:   3'- -GUGGGuua-GUgUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87909 0.69 0.965382
Target:  5'- -uUCCuGUCACGGGAUGGuggccucagGGCGCGUCu -3'
miRNA:   3'- guGGGuUAGUGUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 88075 0.66 0.996555
Target:  5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3'
miRNA:   3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5'
13428 3' -50 NC_003409.1 + 90723 0.69 0.968647
Target:  5'- -uCCUGGcUCugGAGACGAaggacccucGACGCGUCa -3'
miRNA:   3'- guGGGUU-AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90808 0.74 0.839345
Target:  5'- aAUCUGAggacUCugGAGACGAgggaccaucGACGCGCCa -3'
miRNA:   3'- gUGGGUU----AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90831 0.66 0.995948
Target:  5'- --gCCGGUCACGcAGACG-GGCGCGg- -3'
miRNA:   3'- gugGGUUAGUGU-UCUGCuUUGCGCgg -5'
13428 3' -50 NC_003409.1 + 97196 0.71 0.91923
Target:  5'- aACCCAGUCACGcAGAgGuccAgGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGU-UCUgCuu-UgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.