Results 81 - 90 of 90 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 13428 | 3' | -50 | NC_003409.1 | + | 118299 | 0.66 | 0.994473 |
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Target: 5'- -uCCCGGggAgGAGGCuGGggUGCGCCg -3' miRNA: 3'- guGGGUUagUgUUCUG-CUuuGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 118730 | 0.67 | 0.99259 |
|
Target: 5'- cCACCCAuuUCcCGGGGC----CGCGCCa -3' miRNA: 3'- -GUGGGUu-AGuGUUCUGcuuuGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 119614 | 0.66 | 0.996555 |
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Target: 5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3' miRNA: 3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 121278 | 0.68 | 0.979527 |
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Target: 5'- aGCCCGcUCAUAAGACcauAACcugGUGCCa -3' miRNA: 3'- gUGGGUuAGUGUUCUGcu-UUG---CGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 127290 | 0.74 | 0.821895 |
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Target: 5'- gCGCCUGAgguCGGGACGGAgcaccgGCGCGCCc -3' miRNA: 3'- -GUGGGUUaguGUUCUGCUU------UGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 127377 | 0.7 | 0.958153 |
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Target: 5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3' miRNA: 3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 127654 | 0.71 | 0.940743 |
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Target: 5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3' miRNA: 3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 130730 | 0.72 | 0.886539 |
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Target: 5'- aCAUCCAGUgAC-GGGCGAcACGCuGCCc -3' miRNA: 3'- -GUGGGUUAgUGuUCUGCUuUGCG-CGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 132796 | 0.67 | 0.990229 |
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Target: 5'- uUACCUGGcacgcgCACAGGcGCGcgGCGCGCUg -3' miRNA: 3'- -GUGGGUUa-----GUGUUC-UGCuuUGCGCGG- -5' |
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| 13428 | 3' | -50 | NC_003409.1 | + | 134207 | 0.68 | 0.987315 |
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Target: 5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3' miRNA: 3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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