miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 109327 0.66 0.994473
Target:  5'- gGCCCA--CGgGAGcCGGAGCaCGCCg -3'
miRNA:   3'- gUGGGUuaGUgUUCuGCUUUGcGCGG- -5'
13428 3' -50 NC_003409.1 + 109260 0.67 0.988845
Target:  5'- gACCCcGUC-CAGGcACGggGCcCGCUa -3'
miRNA:   3'- gUGGGuUAGuGUUC-UGCuuUGcGCGG- -5'
13428 3' -50 NC_003409.1 + 108206 0.67 0.990229
Target:  5'- gCACCCAGU-GCGAucuCGggGCGC-CCg -3'
miRNA:   3'- -GUGGGUUAgUGUUcu-GCuuUGCGcGG- -5'
13428 3' -50 NC_003409.1 + 108098 0.67 0.988845
Target:  5'- -uUCgAGUCGCucGAGAgCGAcauGCGCGCCg -3'
miRNA:   3'- guGGgUUAGUG--UUCU-GCUu--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107985 0.66 0.995257
Target:  5'- gUACUCuGUgGCAGGGagcuccaGggGCGUGCCc -3'
miRNA:   3'- -GUGGGuUAgUGUUCUg------CuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107946 0.69 0.968647
Target:  5'- gGCCUgcugcaAAUCGCcGGACuGGAGCGCGUg -3'
miRNA:   3'- gUGGG------UUAGUGuUCUG-CUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 106105 0.7 0.958153
Target:  5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3'
miRNA:   3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5'
13428 3' -50 NC_003409.1 + 104677 1.12 0.006928
Target:  5'- cCACCCAAUCACAAGACGAAACGCGCCc -3'
miRNA:   3'- -GUGGGUUAGUGUUCUGCUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 102005 0.66 0.997085
Target:  5'- aCACCCGGUagau-GGCGAgGGCGCGUUc -3'
miRNA:   3'- -GUGGGUUAguguuCUGCU-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 101610 0.66 0.996498
Target:  5'- uUAUUCAgggugucGUCGgAGGugGGuGGCGCGCCg -3'
miRNA:   3'- -GUGGGU-------UAGUgUUCugCU-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 97196 0.71 0.91923
Target:  5'- aACCCAGUCACGcAGAgGuccAgGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGU-UCUgCuu-UgCGCGG- -5'
13428 3' -50 NC_003409.1 + 90831 0.66 0.995948
Target:  5'- --gCCGGUCACGcAGACG-GGCGCGg- -3'
miRNA:   3'- gugGGUUAGUGU-UCUGCuUUGCGCgg -5'
13428 3' -50 NC_003409.1 + 90808 0.74 0.839345
Target:  5'- aAUCUGAggacUCugGAGACGAgggaccaucGACGCGCCa -3'
miRNA:   3'- gUGGGUU----AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90723 0.69 0.968647
Target:  5'- -uCCUGGcUCugGAGACGAaggacccucGACGCGUCa -3'
miRNA:   3'- guGGGUU-AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 88075 0.66 0.996555
Target:  5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3'
miRNA:   3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5'
13428 3' -50 NC_003409.1 + 87909 0.69 0.965382
Target:  5'- -uUCCuGUCACGGGAUGGuggccucagGGCGCGUCu -3'
miRNA:   3'- guGGGuUAGUGUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87720 0.66 0.996555
Target:  5'- gCACUUucucCGgGAGACcAGACGCGCCc -3'
miRNA:   3'- -GUGGGuua-GUgUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87175 0.69 0.974507
Target:  5'- uGCgCCGG-CGgAGGGCGuggccGACGCGCCa -3'
miRNA:   3'- gUG-GGUUaGUgUUCUGCu----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 83850 0.66 0.994389
Target:  5'- uCGCCgCAAagucUCGCgGGGACGggGCGUggggcucuaacuuGCCa -3'
miRNA:   3'- -GUGG-GUU----AGUG-UUCUGCuuUGCG-------------CGG- -5'
13428 3' -50 NC_003409.1 + 81544 0.66 0.996776
Target:  5'- gGCCCGgggagugauggagcaGuUCGCGAaGCGuaaAGGCGCGCCg -3'
miRNA:   3'- gUGGGU---------------U-AGUGUUcUGC---UUUGCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.