miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 81337 0.71 0.935755
Target:  5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3'
miRNA:   3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 81001 0.72 0.893582
Target:  5'- aGCCUGucCACcGGACGAGugGCGCg -3'
miRNA:   3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5'
13428 3' -50 NC_003409.1 + 76441 0.73 0.855975
Target:  5'- uUACCCAAUUGCGAGGgauuacaguUGAAACGUGUa -3'
miRNA:   3'- -GUGGGUUAGUGUUCU---------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 75674 0.66 0.995948
Target:  5'- gCAgCCAgcGUCGCca-ACG-GACGCGCCa -3'
miRNA:   3'- -GUgGGU--UAGUGuucUGCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 75375 0.72 0.900376
Target:  5'- gACgCAggCACGGGGCGAccUGCGCCc -3'
miRNA:   3'- gUGgGUuaGUGUUCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 74251 0.73 0.879251
Target:  5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3'
miRNA:   3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5'
13428 3' -50 NC_003409.1 + 74073 0.71 0.924999
Target:  5'- uCGCCCGAggcuUCugGuuGGGCGAgcgccgggaggAACGCGCUg -3'
miRNA:   3'- -GUGGGUU----AGugU--UCUGCU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60619 0.67 0.993954
Target:  5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3'
miRNA:   3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5'
13428 3' -50 NC_003409.1 + 60071 0.69 0.973683
Target:  5'- gACCCAGgaggaCAUGAGAaaacggucgcucuuUGAAGCGCGCa -3'
miRNA:   3'- gUGGGUUa----GUGUUCU--------------GCUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 52164 0.71 0.941228
Target:  5'- aGCUCAGUCGCAcgggggguggccuguGGCGuguGCGCGCUg -3'
miRNA:   3'- gUGGGUUAGUGUu--------------CUGCuu-UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 51875 0.68 0.987315
Target:  5'- gGCCUucuccgCGCAGGgucaGCGGAGacCGCGCCa -3'
miRNA:   3'- gUGGGuua---GUGUUC----UGCUUU--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 51033 0.66 0.997085
Target:  5'- gACgCAuAUCACGGGAUGcuAGCGUGUCu -3'
miRNA:   3'- gUGgGU-UAGUGUUCUGCu-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 49283 0.69 0.974507
Target:  5'- aCGCCaCGGUgGCccugccuAGugGGguGGCGCGCCa -3'
miRNA:   3'- -GUGG-GUUAgUGu------UCugCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 47742 0.67 0.991474
Target:  5'- aCACCUcuGUCAgAGGAUGccuguCGUGCCg -3'
miRNA:   3'- -GUGGGu-UAGUgUUCUGCuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 45890 0.66 0.995883
Target:  5'- gCGCCCGGgguggccUgACAAGACGcgGCauaCGCCg -3'
miRNA:   3'- -GUGGGUU-------AgUGUUCUGCuuUGc--GCGG- -5'
13428 3' -50 NC_003409.1 + 45394 0.66 0.996498
Target:  5'- uCACCCAggccgcucgcgugAUCACAAaGCGGGACcCgGCCc -3'
miRNA:   3'- -GUGGGU-------------UAGUGUUcUGCUUUGcG-CGG- -5'
13428 3' -50 NC_003409.1 + 44364 0.69 0.974507
Target:  5'- gCACCCcuGUCcuggaGCGAGAgGAucguacCGCGCCa -3'
miRNA:   3'- -GUGGGu-UAG-----UGUUCUgCUuu----GCGCGG- -5'
13428 3' -50 NC_003409.1 + 44009 0.69 0.97284
Target:  5'- cCAUCCAGUCGacCGAGACGugggugguuaauaaaAAcaACGUGCCu -3'
miRNA:   3'- -GUGGGUUAGU--GUUCUGC---------------UU--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 43460 0.72 0.906917
Target:  5'- uCGCCCAgcGUCuuuaaaauaaagACGGGugG-AGCGUGCCg -3'
miRNA:   3'- -GUGGGU--UAG------------UGUUCugCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 41119 0.66 0.995257
Target:  5'- gCGCCCAuucUCAC-GGACcAGcACGCGCg -3'
miRNA:   3'- -GUGGGUu--AGUGuUCUGcUU-UGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.