miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 40591 0.67 0.993586
Target:  5'- aGgCUAGUCuaguAgAGGGCGcgGCGCGCCu -3'
miRNA:   3'- gUgGGUUAG----UgUUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 40404 0.67 0.988845
Target:  5'- aCACgCGcUCGCcuGuCGAcaGGCGCGCCg -3'
miRNA:   3'- -GUGgGUuAGUGuuCuGCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 40199 0.73 0.855975
Target:  5'- uCGCCUAcgCACAAGugGcuucuuAACGCGUa -3'
miRNA:   3'- -GUGGGUuaGUGUUCugCu-----UUGCGCGg -5'
13428 3' -50 NC_003409.1 + 37944 0.69 0.968647
Target:  5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3'
miRNA:   3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37479 0.68 0.979527
Target:  5'- uGCCCGggCACcuuGGCGGAuuugggaucaacGCGCGUCu -3'
miRNA:   3'- gUGGGUuaGUGuu-CUGCUU------------UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37017 0.66 0.995948
Target:  5'- aGCUCGAUCAC--GACGGGAUGaUGUCu -3'
miRNA:   3'- gUGGGUUAGUGuuCUGCUUUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 35883 0.66 0.995257
Target:  5'- aCACCCuggggcUCugGaAGGCGAAGCGauCCa -3'
miRNA:   3'- -GUGGGuu----AGugU-UCUGCUUUGCgcGG- -5'
13428 3' -50 NC_003409.1 + 33998 0.66 0.995948
Target:  5'- -cCCCAca-ACAAGgguACG-GGCGCGCCa -3'
miRNA:   3'- guGGGUuagUGUUC---UGCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 32047 0.68 0.983772
Target:  5'- uCAUCaguAUC-UAAGuCGGAGCGCGCCc -3'
miRNA:   3'- -GUGGgu-UAGuGUUCuGCUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 27219 0.67 0.991474
Target:  5'- gGCCCAAcugCuCGAGGCGAcAACgccaucguGCGCCu -3'
miRNA:   3'- gUGGGUUa--GuGUUCUGCU-UUG--------CGCGG- -5'
13428 3' -50 NC_003409.1 + 26955 0.72 0.900376
Target:  5'- gAUCCGGagGgaaggaAGGGCGggGCGCGCCg -3'
miRNA:   3'- gUGGGUUagUg-----UUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 26008 0.67 0.991355
Target:  5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3'
miRNA:   3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 24836 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24776 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24751 0.67 0.990229
Target:  5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3'
miRNA:   3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24716 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24656 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24596 0.69 0.968647
Target:  5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3'
miRNA:   3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 23395 0.66 0.996555
Target:  5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3'
miRNA:   3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 21619 0.66 0.994955
Target:  5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3'
miRNA:   3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.