miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 108206 0.67 0.990229
Target:  5'- gCACCCAGU-GCGAucuCGggGCGC-CCg -3'
miRNA:   3'- -GUGGGUUAgUGUUcu-GCuuUGCGcGG- -5'
13428 3' -50 NC_003409.1 + 40404 0.67 0.988845
Target:  5'- aCACgCGcUCGCcuGuCGAcaGGCGCGCCg -3'
miRNA:   3'- -GUGgGUuAGUGuuCuGCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90831 0.66 0.995948
Target:  5'- --gCCGGUCACGcAGACG-GGCGCGg- -3'
miRNA:   3'- gugGGUUAGUGU-UCUGCuUUGCGCgg -5'
13428 3' -50 NC_003409.1 + 88075 0.66 0.996555
Target:  5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3'
miRNA:   3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5'
13428 3' -50 NC_003409.1 + 101610 0.66 0.996498
Target:  5'- uUAUUCAgggugucGUCGgAGGugGGuGGCGCGCCg -3'
miRNA:   3'- -GUGGGU-------UAGUgUUCugCU-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 113714 0.69 0.968331
Target:  5'- gGCCCAc-CGCGuguucgaGGGCGAGaaugGCGUGCCa -3'
miRNA:   3'- gUGGGUuaGUGU-------UCUGCUU----UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 121278 0.68 0.979527
Target:  5'- aGCCCGcUCAUAAGACcauAACcugGUGCCa -3'
miRNA:   3'- gUGGGUuAGUGUUCUGcu-UUG---CGCGG- -5'
13428 3' -50 NC_003409.1 + 127290 0.74 0.821895
Target:  5'- gCGCCUGAgguCGGGACGGAgcaccgGCGCGCCc -3'
miRNA:   3'- -GUGGGUUaguGUUCUGCUU------UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 41119 0.66 0.995257
Target:  5'- gCGCCCAuucUCAC-GGACcAGcACGCGCg -3'
miRNA:   3'- -GUGGGUu--AGUGuUCUGcUU-UGCGCGg -5'
13428 3' -50 NC_003409.1 + 49283 0.69 0.974507
Target:  5'- aCGCCaCGGUgGCccugccuAGugGGguGGCGCGCCa -3'
miRNA:   3'- -GUGG-GUUAgUGu------UCugCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107946 0.69 0.968647
Target:  5'- gGCCUgcugcaAAUCGCcGGACuGGAGCGCGUg -3'
miRNA:   3'- gUGGG------UUAGUGuUCUG-CUUUGCGCGg -5'
13428 3' -50 NC_003409.1 + 90723 0.69 0.968647
Target:  5'- -uCCUGGcUCugGAGACGAaggacccucGACGCGUCa -3'
miRNA:   3'- guGGGUU-AGugUUCUGCU---------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 109474 0.68 0.981742
Target:  5'- -uCCCGugggCcCAAGACG--GCGCGCCc -3'
miRNA:   3'- guGGGUua--GuGUUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 32047 0.68 0.983772
Target:  5'- uCAUCaguAUC-UAAGuCGGAGCGCGCCc -3'
miRNA:   3'- -GUGGgu-UAGuGUUCuGCUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 21540 0.67 0.988845
Target:  5'- -uCCCAAUUACAGGagaacaGCGAAcgGCGCGg- -3'
miRNA:   3'- guGGGUUAGUGUUC------UGCUU--UGCGCgg -5'
13428 3' -50 NC_003409.1 + 134207 0.68 0.987315
Target:  5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3'
miRNA:   3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 60619 0.67 0.993954
Target:  5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3'
miRNA:   3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5'
13428 3' -50 NC_003409.1 + 21619 0.66 0.994955
Target:  5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3'
miRNA:   3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 107985 0.66 0.995257
Target:  5'- gUACUCuGUgGCAGGGagcuccaGggGCGUGCCc -3'
miRNA:   3'- -GUGGGuUAgUGUUCUg------CuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 114021 0.73 0.847766
Target:  5'- aCGCCCAaaaGUCACAAGAgacUGAAGuCGCuGCUg -3'
miRNA:   3'- -GUGGGU---UAGUGUUCU---GCUUU-GCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.