Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13428 | 3' | -50 | NC_003409.1 | + | 113594 | 0.67 | 0.988845 |
Target: 5'- cCGCCC-GUCGCu-GGCGcAGGCGauCGCCg -3' miRNA: 3'- -GUGGGuUAGUGuuCUGC-UUUGC--GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 26008 | 0.67 | 0.991355 |
Target: 5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3' miRNA: 3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 24751 | 0.67 | 0.990229 |
Target: 5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3' miRNA: 3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 27219 | 0.67 | 0.991474 |
Target: 5'- gGCCCAAcugCuCGAGGCGAcAACgccaucguGCGCCu -3' miRNA: 3'- gUGGGUUa--GuGUUCUGCU-UUG--------CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 47742 | 0.67 | 0.991474 |
Target: 5'- aCACCUcuGUCAgAGGAUGccuguCGUGCCg -3' miRNA: 3'- -GUGGGu-UAGUgUUCUGCuuu--GCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 40591 | 0.67 | 0.993586 |
Target: 5'- aGgCUAGUCuaguAgAGGGCGcgGCGCGCCu -3' miRNA: 3'- gUgGGUUAG----UgUUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 60619 | 0.67 | 0.993954 |
Target: 5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3' miRNA: 3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 21619 | 0.66 | 0.994955 |
Target: 5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3' miRNA: 3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 106105 | 0.7 | 0.958153 |
Target: 5'- -cCCCAAUCGCAacAGACGuucgaaGUGCUg -3' miRNA: 3'- guGGGUUAGUGU--UCUGCuuug--CGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 127377 | 0.7 | 0.958153 |
Target: 5'- cCGCCgAuggcCACcAGAUGgcACGCGCCg -3' miRNA: 3'- -GUGGgUua--GUGuUCUGCuuUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 114435 | 0.69 | 0.965382 |
Target: 5'- aCACCCGcaGUCAauCAGGGCcgugccCGCGCCu -3' miRNA: 3'- -GUGGGU--UAGU--GUUCUGcuuu--GCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 37944 | 0.69 | 0.968647 |
Target: 5'- gAUCguAUCAauCGAGGCcAGGCGCGCCu -3' miRNA: 3'- gUGGguUAGU--GUUCUGcUUUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 24596 | 0.69 | 0.968647 |
Target: 5'- cCACCCucccCGgAGGGgGAucccGGCGCGCCa -3' miRNA: 3'- -GUGGGuua-GUgUUCUgCU----UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 127654 | 0.71 | 0.940743 |
Target: 5'- cCGCCCGAa-ACAAGugGgcGgGCGCUa -3' miRNA: 3'- -GUGGGUUagUGUUCugCuuUgCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 81337 | 0.71 | 0.935755 |
Target: 5'- -cCCCAAcgGCAAGGCGcaguacgugcGGCGCGCCu -3' miRNA: 3'- guGGGUUagUGUUCUGCu---------UUGCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 109836 | 0.72 | 0.906917 |
Target: 5'- cCGCCCAAgacgccgcggCGgGAGGCG-GugGCGCCc -3' miRNA: 3'- -GUGGGUUa---------GUgUUCUGCuUugCGCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 81001 | 0.72 | 0.893582 |
Target: 5'- aGCCUGucCACcGGACGAGugGCGCg -3' miRNA: 3'- gUGGGUuaGUGuUCUGCUUugCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 74251 | 0.73 | 0.879251 |
Target: 5'- uCGCCCuGUU---AGACGAAGCGgGCCc -3' miRNA: 3'- -GUGGGuUAGuguUCUGCUUUGCgCGG- -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 40199 | 0.73 | 0.855975 |
Target: 5'- uCGCCUAcgCACAAGugGcuucuuAACGCGUa -3' miRNA: 3'- -GUGGGUuaGUGUUCugCu-----UUGCGCGg -5' |
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13428 | 3' | -50 | NC_003409.1 | + | 51033 | 0.66 | 0.997085 |
Target: 5'- gACgCAuAUCACGGGAUGcuAGCGUGUCu -3' miRNA: 3'- gUGgGU-UAGUGUUCUGCu-UUGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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