miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 21619 0.66 0.994955
Target:  5'- aUACCCAuguuggguccacaaGUCuaaggccaGCGAGACaagagcguuucguGAAACGUGCCu -3'
miRNA:   3'- -GUGGGU--------------UAG--------UGUUCUG-------------CUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 109327 0.66 0.994473
Target:  5'- gGCCCA--CGgGAGcCGGAGCaCGCCg -3'
miRNA:   3'- gUGGGUuaGUgUUCuGCUUUGcGCGG- -5'
13428 3' -50 NC_003409.1 + 118299 0.66 0.994473
Target:  5'- -uCCCGGggAgGAGGCuGGggUGCGCCg -3'
miRNA:   3'- guGGGUUagUgUUCUG-CUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 83850 0.66 0.994389
Target:  5'- uCGCCgCAAagucUCGCgGGGACGggGCGUggggcucuaacuuGCCa -3'
miRNA:   3'- -GUGG-GUU----AGUG-UUCUGCuuUGCG-------------CGG- -5'
13428 3' -50 NC_003409.1 + 60619 0.67 0.993954
Target:  5'- uCGCCaGGUCACGggcguguucaguaauAGACGGGACGCauuCCu -3'
miRNA:   3'- -GUGGgUUAGUGU---------------UCUGCUUUGCGc--GG- -5'
13428 3' -50 NC_003409.1 + 40591 0.67 0.993586
Target:  5'- aGgCUAGUCuaguAgAGGGCGcgGCGCGCCu -3'
miRNA:   3'- gUgGGUUAG----UgUUCUGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 118730 0.67 0.99259
Target:  5'- cCACCCAuuUCcCGGGGC----CGCGCCa -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGcuuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 47742 0.67 0.991474
Target:  5'- aCACCUcuGUCAgAGGAUGccuguCGUGCCg -3'
miRNA:   3'- -GUGGGu-UAGUgUUCUGCuuu--GCGCGG- -5'
13428 3' -50 NC_003409.1 + 27219 0.67 0.991474
Target:  5'- gGCCCAAcugCuCGAGGCGAcAACgccaucguGCGCCu -3'
miRNA:   3'- gUGGGUUa--GuGUUCUGCU-UUG--------CGCGG- -5'
13428 3' -50 NC_003409.1 + 26008 0.67 0.991355
Target:  5'- aGCCCAcggacgaGUCAUcuGAagGAGACGuCGCCu -3'
miRNA:   3'- gUGGGU-------UAGUGuuCUg-CUUUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 132796 0.67 0.990229
Target:  5'- uUACCUGGcacgcgCACAGGcGCGcgGCGCGCUg -3'
miRNA:   3'- -GUGGGUUa-----GUGUUC-UGCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 24751 0.67 0.990229
Target:  5'- -uCCCccUCcgGGGAgGggGCGCGCCg -3'
miRNA:   3'- guGGGuuAGugUUCUgCuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 108206 0.67 0.990229
Target:  5'- gCACCCAGU-GCGAucuCGggGCGC-CCg -3'
miRNA:   3'- -GUGGGUUAgUGUUcu-GCuuUGCGcGG- -5'
13428 3' -50 NC_003409.1 + 2298 0.67 0.988845
Target:  5'- aCACCCAcuUCcCAAGAUGAuGCuaCGCCu -3'
miRNA:   3'- -GUGGGUu-AGuGUUCUGCUuUGc-GCGG- -5'
13428 3' -50 NC_003409.1 + 21540 0.67 0.988845
Target:  5'- -uCCCAAUUACAGGagaacaGCGAAcgGCGCGg- -3'
miRNA:   3'- guGGGUUAGUGUUC------UGCUU--UGCGCgg -5'
13428 3' -50 NC_003409.1 + 40404 0.67 0.988845
Target:  5'- aCACgCGcUCGCcuGuCGAcaGGCGCGCCg -3'
miRNA:   3'- -GUGgGUuAGUGuuCuGCU--UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 108098 0.67 0.988845
Target:  5'- -uUCgAGUCGCucGAGAgCGAcauGCGCGCCg -3'
miRNA:   3'- guGGgUUAGUG--UUCU-GCUu--UGCGCGG- -5'
13428 3' -50 NC_003409.1 + 113594 0.67 0.988845
Target:  5'- cCGCCC-GUCGCu-GGCGcAGGCGauCGCCg -3'
miRNA:   3'- -GUGGGuUAGUGuuCUGC-UUUGC--GCGG- -5'
13428 3' -50 NC_003409.1 + 109260 0.67 0.988845
Target:  5'- gACCCcGUC-CAGGcACGggGCcCGCUa -3'
miRNA:   3'- gUGGGuUAGuGUUC-UGCuuUGcGCGG- -5'
13428 3' -50 NC_003409.1 + 134207 0.68 0.987315
Target:  5'- -cCCCAuGUCAUcAGGCGGucUGUGCCa -3'
miRNA:   3'- guGGGU-UAGUGuUCUGCUuuGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.