miRNA display CGI


Results 21 - 40 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13429 3' -62 NC_003409.1 + 81241 0.67 0.531055
Target:  5'- cGGCCGa-GGACGaAGCGuCCGGCuuCCCCAc -3'
miRNA:   3'- -UCGGUggUCUGC-UCGU-GGUCG--GGGGU- -5'
13429 3' -62 NC_003409.1 + 86785 0.69 0.429607
Target:  5'- aGGCCACggaUAGGCG-GCGCCcgagguccaGGUCCCCGc -3'
miRNA:   3'- -UCGGUG---GUCUGCuCGUGG---------UCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 88019 0.67 0.530089
Target:  5'- cGUCGCaCAGACGccgggggauacggGGCaACUAGCCCCUc -3'
miRNA:   3'- uCGGUG-GUCUGC-------------UCG-UGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 93560 0.67 0.549519
Target:  5'- aGGCCGCCAGgaaacagGCG-GCGgCAGUCgCCAc -3'
miRNA:   3'- -UCGGUGGUC-------UGCuCGUgGUCGGgGGU- -5'
13429 3' -62 NC_003409.1 + 101053 0.67 0.502383
Target:  5'- uGCCuacCCAGGCGAGCcgcauuuUCAGCCUgCAc -3'
miRNA:   3'- uCGGu--GGUCUGCUCGu------GGUCGGGgGU- -5'
13429 3' -62 NC_003409.1 + 104879 1.07 0.000842
Target:  5'- cAGCCACCAGACGAGCACCAGCCCCCAc -3'
miRNA:   3'- -UCGGUGGUCUGCUCGUGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 106977 0.67 0.540746
Target:  5'- uGUCucaCGGACGGGCuugucaggagguGCgGGCCCCCGg -3'
miRNA:   3'- uCGGug-GUCUGCUCG------------UGgUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 107356 0.7 0.340477
Target:  5'- cGCCGauGGAauacAGCGCCAGCCCCCu -3'
miRNA:   3'- uCGGUggUCUgc--UCGUGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 107722 0.7 0.37129
Target:  5'- uGCCGCUGGuGCGAGCGCUGGCCgaCAa -3'
miRNA:   3'- uCGGUGGUC-UGCUCGUGGUCGGggGU- -5'
13429 3' -62 NC_003409.1 + 109323 0.66 0.609909
Target:  5'- -cCCACUGGugGAggaaacaaGCGgCAGCCUCCAc -3'
miRNA:   3'- ucGGUGGUCugCU--------CGUgGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 109904 0.7 0.355649
Target:  5'- uGCCACCGG-CGAGCGCCuGGUCggCCAg -3'
miRNA:   3'- uCGGUGGUCuGCUCGUGG-UCGGg-GGU- -5'
13429 3' -62 NC_003409.1 + 110090 0.7 0.387394
Target:  5'- cGCCGCCAGAgCGuuccuGCGCCuGGCCgaCCAg -3'
miRNA:   3'- uCGGUGGUCU-GCu----CGUGG-UCGGg-GGU- -5'
13429 3' -62 NC_003409.1 + 110946 0.66 0.589972
Target:  5'- cGCgAUaugagaGGACGGcGCuCCAGCCCCCc -3'
miRNA:   3'- uCGgUGg-----UCUGCU-CGuGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 111964 0.66 0.589972
Target:  5'- gAGaCCcCCAG-UGAGUcCUGGCCCCCGg -3'
miRNA:   3'- -UC-GGuGGUCuGCUCGuGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 113824 0.67 0.511869
Target:  5'- gGGCUGCCAGAC-AGUACaCuGUCUCCAg -3'
miRNA:   3'- -UCGGUGGUCUGcUCGUG-GuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 114920 0.66 0.608911
Target:  5'- cGUCACCgAGAUGAGCuccaaaaacuacuGgCAGCCUCCc -3'
miRNA:   3'- uCGGUGG-UCUGCUCG-------------UgGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 122483 0.69 0.395617
Target:  5'- cGCCACCuaGCGGGCACaaugaguuauuuCAGCCCUUAu -3'
miRNA:   3'- uCGGUGGucUGCUCGUG------------GUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 127289 0.66 0.57015
Target:  5'- cGCCugagguCgGGACgGAGCACCGGCgCgCCCu -3'
miRNA:   3'- uCGGu-----GgUCUG-CUCGUGGUCG-G-GGGu -5'
13429 3' -62 NC_003409.1 + 127384 0.73 0.236124
Target:  5'- uGGCCACCAGAUG-GCACgC-GCCgCCAg -3'
miRNA:   3'- -UCGGUGGUCUGCuCGUG-GuCGGgGGU- -5'
13429 3' -62 NC_003409.1 + 128473 0.66 0.613906
Target:  5'- cGGCCACCAaAUGAGUuaaagauacacagguAaCAGCCCUCAu -3'
miRNA:   3'- -UCGGUGGUcUGCUCG---------------UgGUCGGGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.