miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13429 3' -62 NC_003409.1 + 104879 1.07 0.000842
Target:  5'- cAGCCACCAGACGAGCACCAGCCCCCAc -3'
miRNA:   3'- -UCGGUGGUCUGCUCGUGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 131646 0.66 0.5603
Target:  5'- gGGCgGgUAGugaGAGCugCAGUCCCCu -3'
miRNA:   3'- -UCGgUgGUCug-CUCGugGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 110946 0.66 0.589972
Target:  5'- cGCgAUaugagaGGACGGcGCuCCAGCCCCCc -3'
miRNA:   3'- uCGgUGg-----UCUGCU-CGuGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 114920 0.66 0.608911
Target:  5'- cGUCACCgAGAUGAGCuccaaaaacuacuGgCAGCCUCCc -3'
miRNA:   3'- uCGGUGG-UCUGCUCG-------------UgGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 134301 0.72 0.284543
Target:  5'- aGGCCAugcCUAGAgGGcGCACC-GCCCCCGg -3'
miRNA:   3'- -UCGGU---GGUCUgCU-CGUGGuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 18146 0.71 0.318609
Target:  5'- uGGCCagggGCCAG-UGAGCGCCucccgguacaAGUCCCCAc -3'
miRNA:   3'- -UCGG----UGGUCuGCUCGUGG----------UCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 109904 0.7 0.355649
Target:  5'- uGCCACCGG-CGAGCGCCuGGUCggCCAg -3'
miRNA:   3'- uCGGUGGUCuGCUCGUGG-UCGGg-GGU- -5'
13429 3' -62 NC_003409.1 + 130758 0.7 0.37129
Target:  5'- gGGCCcaGCUGGGC-AGCACCGuCCCCCGc -3'
miRNA:   3'- -UCGG--UGGUCUGcUCGUGGUcGGGGGU- -5'
13429 3' -62 NC_003409.1 + 9813 0.69 0.438371
Target:  5'- aGGCCAaacuGGCGAGCACuCAcGUCCCUAa -3'
miRNA:   3'- -UCGGUggu-CUGCUCGUG-GU-CGGGGGU- -5'
13429 3' -62 NC_003409.1 + 113824 0.67 0.511869
Target:  5'- gGGCUGCCAGAC-AGUACaCuGUCUCCAg -3'
miRNA:   3'- -UCGGUGGUCUGcUCGUG-GuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 107722 0.7 0.37129
Target:  5'- uGCCGCUGGuGCGAGCGCUGGCCgaCAa -3'
miRNA:   3'- uCGGUGGUC-UGCUCGUGGUCGGggGU- -5'
13429 3' -62 NC_003409.1 + 51771 0.76 0.152165
Target:  5'- cGCCGCCAGA-GGGCGCCguAGCCCaCCc -3'
miRNA:   3'- uCGGUGGUCUgCUCGUGG--UCGGG-GGu -5'
13429 3' -62 NC_003409.1 + 81241 0.67 0.531055
Target:  5'- cGGCCGa-GGACGaAGCGuCCGGCuuCCCCAc -3'
miRNA:   3'- -UCGGUggUCUGC-UCGU-GGUCG--GGGGU- -5'
13429 3' -62 NC_003409.1 + 16978 0.74 0.199604
Target:  5'- uGCCACCGGACGcAGUuagguguCCGGUUCCCAc -3'
miRNA:   3'- uCGGUGGUCUGC-UCGu------GGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 52158 0.7 0.37129
Target:  5'- gAGCUucCCAGAaGAGC-CCGuGCCCCCGc -3'
miRNA:   3'- -UCGGu-GGUCUgCUCGuGGU-CGGGGGU- -5'
13429 3' -62 NC_003409.1 + 52431 0.67 0.553432
Target:  5'- uGGCCGCCacgccugcuggauGGACGuGUuaggauuaugggaaaGCC-GCCCCCAc -3'
miRNA:   3'- -UCGGUGG-------------UCUGCuCG---------------UGGuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 111964 0.66 0.589972
Target:  5'- gAGaCCcCCAG-UGAGUcCUGGCCCCCGg -3'
miRNA:   3'- -UC-GGuGGUCuGCUCGuGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 127384 0.73 0.236124
Target:  5'- uGGCCACCAGAUG-GCACgC-GCCgCCAg -3'
miRNA:   3'- -UCGGUGGUCUGCuCGUG-GuCGGgGGU- -5'
13429 3' -62 NC_003409.1 + 107356 0.7 0.340477
Target:  5'- cGCCGauGGAauacAGCGCCAGCCCCCu -3'
miRNA:   3'- uCGGUggUCUgc--UCGUGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 101053 0.67 0.502383
Target:  5'- uGCCuacCCAGGCGAGCcgcauuuUCAGCCUgCAc -3'
miRNA:   3'- uCGGu--GGUCUGCUCGu------GGUCGGGgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.