miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13429 3' -62 NC_003409.1 + 101053 0.67 0.502383
Target:  5'- uGCCuacCCAGGCGAGCcgcauuuUCAGCCUgCAc -3'
miRNA:   3'- uCGGu--GGUCUGCUCGu------GGUCGGGgGU- -5'
13429 3' -62 NC_003409.1 + 33485 0.67 0.502383
Target:  5'- cGCUgcuCCAGGCGAGaa-CAGCCCuCCGc -3'
miRNA:   3'- uCGGu--GGUCUGCUCgugGUCGGG-GGU- -5'
13429 3' -62 NC_003409.1 + 131238 0.68 0.456198
Target:  5'- aGGCUGCCAGGCcAGCuacGCCAGCgCCa- -3'
miRNA:   3'- -UCGGUGGUCUGcUCG---UGGUCGgGGgu -5'
13429 3' -62 NC_003409.1 + 52551 0.68 0.446344
Target:  5'- cAGCUcuuauCCAGGCacuAGCcuccgaaGCCAGCCCCCGu -3'
miRNA:   3'- -UCGGu----GGUCUGc--UCG-------UGGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 9813 0.69 0.438371
Target:  5'- aGGCCAaacuGGCGAGCACuCAcGUCCCUAa -3'
miRNA:   3'- -UCGGUggu-CUGCUCGUG-GU-CGGGGGU- -5'
13429 3' -62 NC_003409.1 + 86785 0.69 0.429607
Target:  5'- aGGCCACggaUAGGCG-GCGCCcgagguccaGGUCCCCGc -3'
miRNA:   3'- -UCGGUG---GUCUGCuCGUGG---------UCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 122483 0.69 0.395617
Target:  5'- cGCCACCuaGCGGGCACaaugaguuauuuCAGCCCUUAu -3'
miRNA:   3'- uCGGUGGucUGCUCGUG------------GUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 64258 0.7 0.387394
Target:  5'- uGUCACCGGACggcaGAGCacgcaaaacuuuGCCAGCUCCUg -3'
miRNA:   3'- uCGGUGGUCUG----CUCG------------UGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 110090 0.7 0.387394
Target:  5'- cGCCGCCAGAgCGuuccuGCGCCuGGCCgaCCAg -3'
miRNA:   3'- uCGGUGGUCU-GCu----CGUGG-UCGGg-GGU- -5'
13429 3' -62 NC_003409.1 + 107722 0.7 0.37129
Target:  5'- uGCCGCUGGuGCGAGCGCUGGCCgaCAa -3'
miRNA:   3'- uCGGUGGUC-UGCUCGUGGUCGGggGU- -5'
13429 3' -62 NC_003409.1 + 130758 0.7 0.37129
Target:  5'- gGGCCcaGCUGGGC-AGCACCGuCCCCCGc -3'
miRNA:   3'- -UCGG--UGGUCUGcUCGUGGUcGGGGGU- -5'
13429 3' -62 NC_003409.1 + 52158 0.7 0.37129
Target:  5'- gAGCUucCCAGAaGAGC-CCGuGCCCCCGc -3'
miRNA:   3'- -UCGGu-GGUCUgCUCGuGGU-CGGGGGU- -5'
13429 3' -62 NC_003409.1 + 109904 0.7 0.355649
Target:  5'- uGCCACCGG-CGAGCGCCuGGUCggCCAg -3'
miRNA:   3'- uCGGUGGUCuGCUCGUGG-UCGGg-GGU- -5'
13429 3' -62 NC_003409.1 + 68255 0.7 0.348004
Target:  5'- aGGCCucugGCCAGACGGGC-CCAuaCgCCCAa -3'
miRNA:   3'- -UCGG----UGGUCUGCUCGuGGUcgG-GGGU- -5'
13429 3' -62 NC_003409.1 + 107356 0.7 0.340477
Target:  5'- cGCCGauGGAauacAGCGCCAGCCCCCu -3'
miRNA:   3'- uCGGUggUCUgc--UCGUGGUCGGGGGu -5'
13429 3' -62 NC_003409.1 + 18146 0.71 0.318609
Target:  5'- uGGCCagggGCCAG-UGAGCGCCucccgguacaAGUCCCCAc -3'
miRNA:   3'- -UCGG----UGGUCuGCUCGUGG----------UCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 134301 0.72 0.284543
Target:  5'- aGGCCAugcCUAGAgGGcGCACC-GCCCCCGg -3'
miRNA:   3'- -UCGGU---GGUCUgCU-CGUGGuCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 24208 0.72 0.277446
Target:  5'- cGCCAgCGGugG-GCGgggccccauccucCCGGCCCCCAu -3'
miRNA:   3'- uCGGUgGUCugCuCGU-------------GGUCGGGGGU- -5'
13429 3' -62 NC_003409.1 + 127384 0.73 0.236124
Target:  5'- uGGCCACCAGAUG-GCACgC-GCCgCCAg -3'
miRNA:   3'- -UCGGUGGUCUGCuCGUG-GuCGGgGGU- -5'
13429 3' -62 NC_003409.1 + 78444 0.74 0.214614
Target:  5'- cGGCUACCGGGCu-GCGCCAGCcacggcugCCCCGa -3'
miRNA:   3'- -UCGGUGGUCUGcuCGUGGUCG--------GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.