miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13429 5' -55.1 NC_003409.1 + 23226 0.66 0.942131
Target:  5'- gGUGGGGCGCGcUGGAUUuuuGGaCCGugGg -3'
miRNA:   3'- gCGCCUUGUGU-ACCUGG---UCaGGCugC- -5'
13429 5' -55.1 NC_003409.1 + 40487 0.66 0.942131
Target:  5'- aGCGGAcggACGCAacguacguggGGAUCGG-CUGGCGg -3'
miRNA:   3'- gCGCCU---UGUGUa---------CCUGGUCaGGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 132690 0.66 0.92729
Target:  5'- aCGCG--ACACAUGGACCGaugcUCCaACGg -3'
miRNA:   3'- -GCGCcuUGUGUACCUGGUc---AGGcUGC- -5'
13429 5' -55.1 NC_003409.1 + 53240 0.66 0.92729
Target:  5'- gCGUGGAcUACAUGGcguucuguCCGGgugUCGACGg -3'
miRNA:   3'- -GCGCCUuGUGUACCu-------GGUCa--GGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 66651 0.66 0.921865
Target:  5'- uGCGaGAugGCGUGGACUuuguGUCC-ACu -3'
miRNA:   3'- gCGC-CUugUGUACCUGGu---CAGGcUGc -5'
13429 5' -55.1 NC_003409.1 + 96082 0.67 0.904161
Target:  5'- gGUGGAuguGgGCGUGGugCAcaCCGACGc -3'
miRNA:   3'- gCGCCU---UgUGUACCugGUcaGGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 104379 0.67 0.904161
Target:  5'- uCGCGGAugGCcgcGuCCuGUCCGAUGa -3'
miRNA:   3'- -GCGCCUugUGuacCuGGuCAGGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 53212 0.67 0.897788
Target:  5'- gGCGGAGCAauguagGGAaaucUCAGUCCGGa- -3'
miRNA:   3'- gCGCCUUGUgua---CCU----GGUCAGGCUgc -5'
13429 5' -55.1 NC_003409.1 + 44813 0.67 0.897788
Target:  5'- uCGCGGGACACGagacggUGGGUCGGacgCCGAUc -3'
miRNA:   3'- -GCGCCUUGUGU------ACCUGGUCa--GGCUGc -5'
13429 5' -55.1 NC_003409.1 + 114841 0.67 0.884352
Target:  5'- cCGUGGAACccaACAUGGAgUAcgcGUCUGACc -3'
miRNA:   3'- -GCGCCUUG---UGUACCUgGU---CAGGCUGc -5'
13429 5' -55.1 NC_003409.1 + 26937 0.67 0.884352
Target:  5'- gGCGGGGCGCGccguguuuUGGACaacuuGUCCGGa- -3'
miRNA:   3'- gCGCCUUGUGU--------ACCUGgu---CAGGCUgc -5'
13429 5' -55.1 NC_003409.1 + 27964 0.67 0.884352
Target:  5'- gGUGGGAC-CGUGGGCgAG-CCGAa- -3'
miRNA:   3'- gCGCCUUGuGUACCUGgUCaGGCUgc -5'
13429 5' -55.1 NC_003409.1 + 41668 0.68 0.875137
Target:  5'- uCGUGGGugccuaaaaaguuuGCGCAggGGugCAGUCCGcugcACGa -3'
miRNA:   3'- -GCGCCU--------------UGUGUa-CCugGUCAGGC----UGC- -5'
13429 5' -55.1 NC_003409.1 + 20721 0.69 0.830566
Target:  5'- gGCGGcgUACGUGGACgCGGaugCUGACu -3'
miRNA:   3'- gCGCCuuGUGUACCUG-GUCa--GGCUGc -5'
13429 5' -55.1 NC_003409.1 + 46185 0.73 0.587375
Target:  5'- gGCGGc-CACGUGGGCCGGggCGAUGa -3'
miRNA:   3'- gCGCCuuGUGUACCUGGUCagGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 50294 0.74 0.567115
Target:  5'- aGCaGGAAacuCGUGGAgCGGUCUGACGa -3'
miRNA:   3'- gCG-CCUUgu-GUACCUgGUCAGGCUGC- -5'
13429 5' -55.1 NC_003409.1 + 104913 1.1 0.003107
Target:  5'- cCGCGGAACACAUGGACCAGUCCGACGg -3'
miRNA:   3'- -GCGCCUUGUGUACCUGGUCAGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.