miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13431 5' -52.2 NC_003409.1 + 40602 0.66 0.981031
Target:  5'- uCCGgaCGUGAAGGCUAGucuaguAGAGg--GCGc -3'
miRNA:   3'- -GGUg-GCGCUUCCGAUC------UCUCaaaCGU- -5'
13431 5' -52.2 NC_003409.1 + 62115 0.66 0.981031
Target:  5'- -aGCCGCaGAGGUUGGgGGAGUUucUGUg -3'
miRNA:   3'- ggUGGCGcUUCCGAUC-UCUCAA--ACGu -5'
13431 5' -52.2 NC_003409.1 + 37238 0.67 0.957117
Target:  5'- gCCGCCaaGAAGGCUAGAccc--UGCAu -3'
miRNA:   3'- -GGUGGcgCUUCCGAUCUcucaaACGU- -5'
13431 5' -52.2 NC_003409.1 + 79370 0.68 0.929326
Target:  5'- aCCGCCGCGAGGcGCUgacAGuaAGGGUuauuuuUUGUAc -3'
miRNA:   3'- -GGUGGCGCUUC-CGA---UC--UCUCA------AACGU- -5'
13431 5' -52.2 NC_003409.1 + 133176 0.7 0.878106
Target:  5'- gCGCCGCGGAccGGcCUGGAGcuGUUUGUc -3'
miRNA:   3'- gGUGGCGCUU--CC-GAUCUCu-CAAACGu -5'
13431 5' -52.2 NC_003409.1 + 5931 0.71 0.812065
Target:  5'- gUCACUgGCGaAAGGCaagAGAGAGUagUUGCAu -3'
miRNA:   3'- -GGUGG-CGC-UUCCGa--UCUCUCA--AACGU- -5'
13431 5' -52.2 NC_003409.1 + 30500 0.71 0.812065
Target:  5'- gCGCuCGCGGAGGCUGGcGAGgccugaagGCGu -3'
miRNA:   3'- gGUG-GCGCUUCCGAUCuCUCaaa-----CGU- -5'
13431 5' -52.2 NC_003409.1 + 111856 0.72 0.800162
Target:  5'- gCCACCGCGggGGCggccguuuccgucgUGGAuGAGagggUUGUg -3'
miRNA:   3'- -GGUGGCGCuuCCG--------------AUCU-CUCa---AACGu -5'
13431 5' -52.2 NC_003409.1 + 45794 0.72 0.7927
Target:  5'- aCCACCGCGuuucucuGGUUGGGGAgccuggugacauaGUUUGCc -3'
miRNA:   3'- -GGUGGCGCuu-----CCGAUCUCU-------------CAAACGu -5'
13431 5' -52.2 NC_003409.1 + 36728 0.76 0.567285
Target:  5'- cCCGCCGCaacGAcucGGGCUGGAGAGggUGa- -3'
miRNA:   3'- -GGUGGCG---CU---UCCGAUCUCUCaaACgu -5'
13431 5' -52.2 NC_003409.1 + 107268 1.11 0.004066
Target:  5'- cCCACCGCGAAGGCUAGAGAGUUUGCAg -3'
miRNA:   3'- -GGUGGCGCUUCCGAUCUCUCAAACGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.