miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13435 3' -60.6 NC_003409.1 + 22591 0.66 0.709361
Target:  5'- gGCCGUgaUUGAGCUAuGugcGGCCaGCGGUc -3'
miRNA:   3'- -UGGCGagAGCUCGAU-Cu--CCGG-CGCCG- -5'
13435 3' -60.6 NC_003409.1 + 43459 0.66 0.689708
Target:  5'- aACCauGCUCUcCGAcauGCU---GGCCGCGGUg -3'
miRNA:   3'- -UGG--CGAGA-GCU---CGAucuCCGGCGCCG- -5'
13435 3' -60.6 NC_003409.1 + 112227 0.66 0.679809
Target:  5'- aACCGCg--CGAGCgcgcugaccGAGuuuCCGCGGCg -3'
miRNA:   3'- -UGGCGagaGCUCGau-------CUCc--GGCGCCG- -5'
13435 3' -60.6 NC_003409.1 + 32420 0.66 0.669872
Target:  5'- aGCCGCUgagcccgGGGCUuaGGAGGCUcauGUGGCg -3'
miRNA:   3'- -UGGCGAgag----CUCGA--UCUCCGG---CGCCG- -5'
13435 3' -60.6 NC_003409.1 + 36726 0.66 0.659906
Target:  5'- cGCCGCaacgaCUCGGGCUggAGAGGgUGagaauGGCg -3'
miRNA:   3'- -UGGCGa----GAGCUCGA--UCUCCgGCg----CCG- -5'
13435 3' -60.6 NC_003409.1 + 121726 0.66 0.659906
Target:  5'- uCCagaUCUUccaGGGCUAGAGcuGCCGCGGUg -3'
miRNA:   3'- uGGcg-AGAG---CUCGAUCUC--CGGCGCCG- -5'
13435 3' -60.6 NC_003409.1 + 118291 0.66 0.649919
Target:  5'- cACCagGUUCcCGGGgaGGAGGCUGgGGUg -3'
miRNA:   3'- -UGG--CGAGaGCUCgaUCUCCGGCgCCG- -5'
13435 3' -60.6 NC_003409.1 + 85291 0.67 0.609909
Target:  5'- uGCgGCg--CGAGCUAGucuGGuuGCGGg -3'
miRNA:   3'- -UGgCGagaGCUCGAUCu--CCggCGCCg -5'
13435 3' -60.6 NC_003409.1 + 27062 0.68 0.5603
Target:  5'- gUCGC-CUCGAGC-AGuuGGGCCGCaGUg -3'
miRNA:   3'- uGGCGaGAGCUCGaUC--UCCGGCGcCG- -5'
13435 3' -60.6 NC_003409.1 + 45516 0.71 0.403952
Target:  5'- gACCGCUCUCGc----GAGGCgGCGGa -3'
miRNA:   3'- -UGGCGAGAGCucgauCUCCGgCGCCg -5'
13435 3' -60.6 NC_003409.1 + 13877 0.72 0.355649
Target:  5'- uACUGCgggagC-CGAGCgucaAGGCCGCGGCc -3'
miRNA:   3'- -UGGCGa----GaGCUCGauc-UCCGGCGCCG- -5'
13435 3' -60.6 NC_003409.1 + 38129 0.72 0.333068
Target:  5'- cGCCGcCUCUUGAGCUGcGcAGGCgCGCcuGGCc -3'
miRNA:   3'- -UGGC-GAGAGCUCGAU-C-UCCG-GCG--CCG- -5'
13435 3' -60.6 NC_003409.1 + 30953 0.73 0.318609
Target:  5'- -aUGCUCUgCGuGCUGGAGGCgGgGGUg -3'
miRNA:   3'- ugGCGAGA-GCuCGAUCUCCGgCgCCG- -5'
13435 3' -60.6 NC_003409.1 + 108436 1.1 0.000776
Target:  5'- gACCGCUCUCGAGCUAGAGGCCGCGGCu -3'
miRNA:   3'- -UGGCGAGAGCUCGAUCUCCGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.