miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13435 5' -57 NC_003409.1 + 41785 0.66 0.852641
Target:  5'- gGCGACGCUuucaAGAaUCCgGUacgcgccgaaagaccGGCGAGCa -3'
miRNA:   3'- -UGCUGCGA----UCUgAGGaCG---------------UCGCUCGc -5'
13435 5' -57 NC_003409.1 + 130074 0.66 0.848677
Target:  5'- gGCGACGCUggauccgGGACagCUGCuauacGCGGGgGu -3'
miRNA:   3'- -UGCUGCGA-------UCUGagGACGu----CGCUCgC- -5'
13435 5' -57 NC_003409.1 + 80388 0.66 0.832338
Target:  5'- gACGGCuauuuugGCgGGAgUCUUGUAgGCGAGCGg -3'
miRNA:   3'- -UGCUG-------CGaUCUgAGGACGU-CGCUCGC- -5'
13435 5' -57 NC_003409.1 + 40572 0.66 0.824743
Target:  5'- cGCGGCGCg-----CCUGUcgacaGGCGAGCGc -3'
miRNA:   3'- -UGCUGCGaucugaGGACG-----UCGCUCGC- -5'
13435 5' -57 NC_003409.1 + 107997 0.66 0.824743
Target:  5'- gGCGAUGCgcgcguACUCUgugGCAGgGAGCu -3'
miRNA:   3'- -UGCUGCGauc---UGAGGa--CGUCgCUCGc -5'
13435 5' -57 NC_003409.1 + 24735 0.67 0.816136
Target:  5'- -gGGCGCgccgGGGCUCCUGgGGUGcuGCc -3'
miRNA:   3'- ugCUGCGa---UCUGAGGACgUCGCu-CGc -5'
13435 5' -57 NC_003409.1 + 125756 0.67 0.798427
Target:  5'- cUGugGCUccugcuguuguGGCUCCUGCAG-GGGCu -3'
miRNA:   3'- uGCugCGAu----------CUGAGGACGUCgCUCGc -5'
13435 5' -57 NC_003409.1 + 125700 0.67 0.798427
Target:  5'- cUGugGCUccugcuguuguGGCUCCUGCAG-GGGCu -3'
miRNA:   3'- uGCugCGAu----------CUGAGGACGUCgCUCGc -5'
13435 5' -57 NC_003409.1 + 104859 0.67 0.798427
Target:  5'- gACGACGCgAGG--UCUGC-GCGGGCGc -3'
miRNA:   3'- -UGCUGCGaUCUgaGGACGuCGCUCGC- -5'
13435 5' -57 NC_003409.1 + 93646 0.67 0.798427
Target:  5'- gGCGGCG--GGAUguaCgUGCAGCGGGCa -3'
miRNA:   3'- -UGCUGCgaUCUGa--GgACGUCGCUCGc -5'
13435 5' -57 NC_003409.1 + 14034 0.67 0.798427
Target:  5'- uUGACGCUcGGCUCCcGCAGUauGAGg- -3'
miRNA:   3'- uGCUGCGAuCUGAGGaCGUCG--CUCgc -5'
13435 5' -57 NC_003409.1 + 125658 0.67 0.789341
Target:  5'- uUGugGCUccugcuguuguGGCUCCUGCAG-GGGCu -3'
miRNA:   3'- uGCugCGAu----------CUGAGGACGUCgCUCGc -5'
13435 5' -57 NC_003409.1 + 103032 0.68 0.73215
Target:  5'- cAUGAUGUggaagUAGGCUCUgGCuAGCGGGCGc -3'
miRNA:   3'- -UGCUGCG-----AUCUGAGGaCG-UCGCUCGC- -5'
13435 5' -57 NC_003409.1 + 113533 0.68 0.73215
Target:  5'- -aGGCGC-AGAUUUgUGCGGCGcAGCa -3'
miRNA:   3'- ugCUGCGaUCUGAGgACGUCGC-UCGc -5'
13435 5' -57 NC_003409.1 + 46855 0.68 0.722259
Target:  5'- aGCGugGgaUAGGcCUCCUGCAGCauauGGCa -3'
miRNA:   3'- -UGCugCg-AUCU-GAGGACGUCGc---UCGc -5'
13435 5' -57 NC_003409.1 + 8273 0.68 0.722259
Target:  5'- gUGACGCUGGcucaguGCUUCgagGCuGCGGGCa -3'
miRNA:   3'- uGCUGCGAUC------UGAGGa--CGuCGCUCGc -5'
13435 5' -57 NC_003409.1 + 56325 0.69 0.702251
Target:  5'- -aGACGCuUGGACcagucuggaUCCUGguGCGuGCa -3'
miRNA:   3'- ugCUGCG-AUCUG---------AGGACguCGCuCGc -5'
13435 5' -57 NC_003409.1 + 107665 0.69 0.696199
Target:  5'- cACGGCGUUGGuACUCCgcUGCcagggcaucccagucAGCGGGCc -3'
miRNA:   3'- -UGCUGCGAUC-UGAGG--ACG---------------UCGCUCGc -5'
13435 5' -57 NC_003409.1 + 100900 0.69 0.671816
Target:  5'- aACGGCGCcugccgcaAGGcCUCaUGCAGCGAGCc -3'
miRNA:   3'- -UGCUGCGa-------UCU-GAGgACGUCGCUCGc -5'
13435 5' -57 NC_003409.1 + 108290 0.69 0.670795
Target:  5'- cGCGAUGCUuuucucuGGGCcUCUGCGGCGcGCa -3'
miRNA:   3'- -UGCUGCGA-------UCUGaGGACGUCGCuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.