Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13436 | 3' | -57.9 | NC_003409.1 | + | 103639 | 0.66 | 0.793672 |
Target: 5'- ---gGGGGCGGcUGGCgggucgggugUCCUGACGCa- -3' miRNA: 3'- gaggCCCUGUC-ACCG----------AGGACUGUGaa -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 125776 | 0.66 | 0.802707 |
Target: 5'- gCUCCugcaGGGGCuccugcugcuGUGGCUCCUGcuGCugUg -3' miRNA: 3'- -GAGG----CCCUGu---------CACCGAGGAC--UGugAa -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 24747 | 0.67 | 0.706832 |
Target: 5'- cCUCCGGGGagggggcgcgcCGG-GGCUCCUGGggUGCUg -3' miRNA: 3'- -GAGGCCCU-----------GUCaCCGAGGACU--GUGAa -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 8172 | 0.67 | 0.736691 |
Target: 5'- gUCUGGGGCGGgaacacGUagagaUCCUGACACUg -3' miRNA: 3'- gAGGCCCUGUCac----CG-----AGGACUGUGAa -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 125678 | 0.67 | 0.756152 |
Target: 5'- gCUCCugcaGGGGCuccugcugcuGUGGCUCCUG-CugUUg -3' miRNA: 3'- -GAGG----CCCUGu---------CACCGAGGACuGugAA- -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 24099 | 0.68 | 0.696739 |
Target: 5'- -cCCGuGGACAG-GGCcccuauaaUCCUGGCACc- -3' miRNA: 3'- gaGGC-CCUGUCaCCG--------AGGACUGUGaa -5' |
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13436 | 3' | -57.9 | NC_003409.1 | + | 108952 | 1.05 | 0.002994 |
Target: 5'- gCUCCGGGACAGUGGCUCCUGACACUUc -3' miRNA: 3'- -GAGGCCCUGUCACCGAGGACUGUGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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