Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13436 | 5' | -64 | NC_003409.1 | + | 108991 | 1.12 | 0.000318 |
Target: 5'- cCCACGCGCCCGGCCUGCGUCCCAGCCg -3' miRNA: 3'- -GGUGCGCGGGCCGGACGCAGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 49326 | 0.81 | 0.064222 |
Target: 5'- gCAUGUGaCCCGGCCUGCGgUCCCAGg- -3' miRNA: 3'- gGUGCGC-GGGCCGGACGC-AGGGUCgg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 120385 | 0.77 | 0.120281 |
Target: 5'- gCugGCGCUcaCGGCCcGUGUgCCAGCCg -3' miRNA: 3'- gGugCGCGG--GCCGGaCGCAgGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 20638 | 0.73 | 0.229559 |
Target: 5'- --gUGCGCCaGGCC-GCG-CCCGGCCa -3' miRNA: 3'- gguGCGCGGgCCGGaCGCaGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 27647 | 0.72 | 0.240341 |
Target: 5'- cCCGCcaaCGCCCGGaaaccgcaUGCGUUCCAGUCg -3' miRNA: 3'- -GGUGc--GCGGGCCgg------ACGCAGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 38108 | 0.72 | 0.257302 |
Target: 5'- -gGCGCGCCUGGCCU-CGauugauacgaUCCUAGUCu -3' miRNA: 3'- ggUGCGCGGGCCGGAcGC----------AGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 9297 | 0.71 | 0.307306 |
Target: 5'- uCUACGCGgaaCCCGGCUgGUuUCCCGGCa -3' miRNA: 3'- -GGUGCGC---GGGCCGGaCGcAGGGUCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 130631 | 0.71 | 0.281424 |
Target: 5'- uCCAUGUcCCCgugGGCCaugGCGUUCCAGUCa -3' miRNA: 3'- -GGUGCGcGGG---CCGGa--CGCAGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 77442 | 0.71 | 0.281424 |
Target: 5'- aCCGgGCgaagGCCUGGCgCUGag-CCCAGCCg -3' miRNA: 3'- -GGUgCG----CGGGCCG-GACgcaGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 113762 | 0.7 | 0.314054 |
Target: 5'- cCCGCGCGUCgGGCCguugGUGggaaaaCCGGCa -3' miRNA: 3'- -GGUGCGCGGgCCGGa---CGCag----GGUCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 63812 | 0.69 | 0.387636 |
Target: 5'- aCCugGCGCCUGaGCCccugagugGuCGUCUCuuGGCCu -3' miRNA: 3'- -GGugCGCGGGC-CGGa-------C-GCAGGG--UCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 118491 | 0.69 | 0.401223 |
Target: 5'- cCgGCGCGgcgcaccccaggaaCCCGGCgCgGCGcacCCCAGCCu -3' miRNA: 3'- -GgUGCGC--------------GGGCCG-GaCGCa--GGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 132965 | 0.69 | 0.379786 |
Target: 5'- -aGCGCGCCgCGcGCCUGUG-CgCguGCCa -3' miRNA: 3'- ggUGCGCGG-GC-CGGACGCaG-GguCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 107776 | 0.69 | 0.387636 |
Target: 5'- gCCACGCGCCCaGUCcgGCGauUUgCAGCa -3' miRNA: 3'- -GGUGCGCGGGcCGGa-CGC--AGgGUCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 114454 | 0.69 | 0.364409 |
Target: 5'- gC-CGUGCCCGcGCCUcggagaauacgGCGUCCguGCUc -3' miRNA: 3'- gGuGCGCGGGC-CGGA-----------CGCAGGguCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 90671 | 0.69 | 0.379786 |
Target: 5'- uUC-CGCGCCC-GUCUGCGUgaCCGGCa -3' miRNA: 3'- -GGuGCGCGGGcCGGACGCAg-GGUCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 24212 | 0.68 | 0.42008 |
Target: 5'- -gGCGCGCCagCGGUggGCGgggccccauccUCCCGGCCc -3' miRNA: 3'- ggUGCGCGG--GCCGgaCGC-----------AGGGUCGG- -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 43774 | 0.68 | 0.457599 |
Target: 5'- gCCGCGgGCCCGGacauggcacuuuccaCUUGC--CCCAGCa -3' miRNA: 3'- -GGUGCgCGGGCC---------------GGACGcaGGGUCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 40699 | 0.68 | 0.428444 |
Target: 5'- aCugGCGCCaccgaaCGGCC-GCGUCCaacgAGCa -3' miRNA: 3'- gGugCGCGG------GCCGGaCGCAGGg---UCGg -5' |
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13436 | 5' | -64 | NC_003409.1 | + | 110076 | 0.68 | 0.411815 |
Target: 5'- uCC-UGCGCCUGGCCgaccagGCGcUCgCCGGUg -3' miRNA: 3'- -GGuGCGCGGGCCGGa-----CGC-AG-GGUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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