miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13436 5' -64 NC_003409.1 + 89124 0.68 0.445463
Target:  5'- gCCAguCGCGCCCuccaucgcGCCUGCGaauuuUCCCA-CCa -3'
miRNA:   3'- -GGU--GCGCGGGc-------CGGACGC-----AGGGUcGG- -5'
13436 5' -64 NC_003409.1 + 90671 0.69 0.379786
Target:  5'- uUC-CGCGCCC-GUCUGCGUgaCCGGCa -3'
miRNA:   3'- -GGuGCGCGGGcCGGACGCAg-GGUCGg -5'
13436 5' -64 NC_003409.1 + 95427 0.67 0.507804
Target:  5'- gUCACGCaCuuGGCCcugauaugcaUGUGUCUguGCCc -3'
miRNA:   3'- -GGUGCGcGggCCGG----------ACGCAGGguCGG- -5'
13436 5' -64 NC_003409.1 + 107776 0.69 0.387636
Target:  5'- gCCACGCGCCCaGUCcgGCGauUUgCAGCa -3'
miRNA:   3'- -GGUGCGCGGGcCGGa-CGC--AGgGUCGg -5'
13436 5' -64 NC_003409.1 + 108991 1.12 0.000318
Target:  5'- cCCACGCGCCCGGCCUGCGUCCCAGCCg -3'
miRNA:   3'- -GGUGCGCGGGCCGGACGCAGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 109502 0.67 0.498659
Target:  5'- gUACGCGUCCGGggcgGCGUgcUCCGGCUc -3'
miRNA:   3'- gGUGCGCGGGCCgga-CGCA--GGGUCGG- -5'
13436 5' -64 NC_003409.1 + 110076 0.68 0.411815
Target:  5'- uCC-UGCGCCUGGCCgaccagGCGcUCgCCGGUg -3'
miRNA:   3'- -GGuGCGCGGGCCGGa-----CGC-AG-GGUCGg -5'
13436 5' -64 NC_003409.1 + 113762 0.7 0.314054
Target:  5'- cCCGCGCGUCgGGCCguugGUGggaaaaCCGGCa -3'
miRNA:   3'- -GGUGCGCGGgCCGGa---CGCag----GGUCGg -5'
13436 5' -64 NC_003409.1 + 114454 0.69 0.364409
Target:  5'- gC-CGUGCCCGcGCCUcggagaauacgGCGUCCguGCUc -3'
miRNA:   3'- gGuGCGCGGGC-CGGA-----------CGCAGGguCGG- -5'
13436 5' -64 NC_003409.1 + 116607 0.67 0.480594
Target:  5'- aCCGuCGCaCCCGGCCgcUGCGUCUC--CCu -3'
miRNA:   3'- -GGU-GCGcGGGCCGG--ACGCAGGGucGG- -5'
13436 5' -64 NC_003409.1 + 118491 0.69 0.401223
Target:  5'- cCgGCGCGgcgcaccccaggaaCCCGGCgCgGCGcacCCCAGCCu -3'
miRNA:   3'- -GgUGCGC--------------GGGCCG-GaCGCa--GGGUCGG- -5'
13436 5' -64 NC_003409.1 + 120385 0.77 0.120281
Target:  5'- gCugGCGCUcaCGGCCcGUGUgCCAGCCg -3'
miRNA:   3'- gGugCGCGG--GCCGGaCGCAgGGUCGG- -5'
13436 5' -64 NC_003409.1 + 130631 0.71 0.281424
Target:  5'- uCCAUGUcCCCgugGGCCaugGCGUUCCAGUCa -3'
miRNA:   3'- -GGUGCGcGGG---CCGGa--CGCAGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 132965 0.69 0.379786
Target:  5'- -aGCGCGCCgCGcGCCUGUG-CgCguGCCa -3'
miRNA:   3'- ggUGCGCGG-GC-CGGACGCaG-GguCGG- -5'
13436 5' -64 NC_003409.1 + 133127 0.67 0.480594
Target:  5'- -uGCGCaCCCaccuGCCUGCGgaUCCCgcGGCCg -3'
miRNA:   3'- ggUGCGcGGGc---CGGACGC--AGGG--UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.