miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13436 5' -64 NC_003409.1 + 63812 0.69 0.387636
Target:  5'- aCCugGCGCCUGaGCCccugagugGuCGUCUCuuGGCCu -3'
miRNA:   3'- -GGugCGCGGGC-CGGa-------C-GCAGGG--UCGG- -5'
13436 5' -64 NC_003409.1 + 107776 0.69 0.387636
Target:  5'- gCCACGCGCCCaGUCcgGCGauUUgCAGCa -3'
miRNA:   3'- -GGUGCGCGGGcCGGa-CGC--AGgGUCGg -5'
13436 5' -64 NC_003409.1 + 132965 0.69 0.379786
Target:  5'- -aGCGCGCCgCGcGCCUGUG-CgCguGCCa -3'
miRNA:   3'- ggUGCGCGG-GC-CGGACGCaG-GguCGG- -5'
13436 5' -64 NC_003409.1 + 90671 0.69 0.379786
Target:  5'- uUC-CGCGCCC-GUCUGCGUgaCCGGCa -3'
miRNA:   3'- -GGuGCGCGGGcCGGACGCAg-GGUCGg -5'
13436 5' -64 NC_003409.1 + 114454 0.69 0.364409
Target:  5'- gC-CGUGCCCGcGCCUcggagaauacgGCGUCCguGCUc -3'
miRNA:   3'- gGuGCGCGGGC-CGGA-----------CGCAGGguCGG- -5'
13436 5' -64 NC_003409.1 + 113762 0.7 0.314054
Target:  5'- cCCGCGCGUCgGGCCguugGUGggaaaaCCGGCa -3'
miRNA:   3'- -GGUGCGCGGgCCGGa---CGCag----GGUCGg -5'
13436 5' -64 NC_003409.1 + 9297 0.71 0.307306
Target:  5'- uCUACGCGgaaCCCGGCUgGUuUCCCGGCa -3'
miRNA:   3'- -GGUGCGC---GGGCCGGaCGcAGGGUCGg -5'
13436 5' -64 NC_003409.1 + 77442 0.71 0.281424
Target:  5'- aCCGgGCgaagGCCUGGCgCUGag-CCCAGCCg -3'
miRNA:   3'- -GGUgCG----CGGGCCG-GACgcaGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 130631 0.71 0.281424
Target:  5'- uCCAUGUcCCCgugGGCCaugGCGUUCCAGUCa -3'
miRNA:   3'- -GGUGCGcGGG---CCGGa--CGCAGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 38108 0.72 0.257302
Target:  5'- -gGCGCGCCUGGCCU-CGauugauacgaUCCUAGUCu -3'
miRNA:   3'- ggUGCGCGGGCCGGAcGC----------AGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 27647 0.72 0.240341
Target:  5'- cCCGCcaaCGCCCGGaaaccgcaUGCGUUCCAGUCg -3'
miRNA:   3'- -GGUGc--GCGGGCCgg------ACGCAGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 20638 0.73 0.229559
Target:  5'- --gUGCGCCaGGCC-GCG-CCCGGCCa -3'
miRNA:   3'- gguGCGCGGgCCGGaCGCaGGGUCGG- -5'
13436 5' -64 NC_003409.1 + 120385 0.77 0.120281
Target:  5'- gCugGCGCUcaCGGCCcGUGUgCCAGCCg -3'
miRNA:   3'- gGugCGCGG--GCCGGaCGCAgGGUCGG- -5'
13436 5' -64 NC_003409.1 + 49326 0.81 0.064222
Target:  5'- gCAUGUGaCCCGGCCUGCGgUCCCAGg- -3'
miRNA:   3'- gGUGCGC-GGGCCGGACGC-AGGGUCgg -5'
13436 5' -64 NC_003409.1 + 108991 1.12 0.000318
Target:  5'- cCCACGCGCCCGGCCUGCGUCCCAGCCg -3'
miRNA:   3'- -GGUGCGCGGGCCGGACGCAGGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.