miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13437 3' -54.8 NC_003409.1 + 24213 0.66 0.927861
Target:  5'- ---gGGCGcgccaGCgGUgGGCGGGgCCCCa -3'
miRNA:   3'- cuaaUCGCaaa--CGgCA-UCGCCC-GGGG- -5'
13437 3' -54.8 NC_003409.1 + 68219 0.66 0.922367
Target:  5'- --gUAGCa---GUgGUAGCGGGCCgCg -3'
miRNA:   3'- cuaAUCGcaaaCGgCAUCGCCCGGgG- -5'
13437 3' -54.8 NC_003409.1 + 20193 0.66 0.904405
Target:  5'- -uUUAGCGUgcgGUCagaGUGGUGGGCgUCa -3'
miRNA:   3'- cuAAUCGCAaa-CGG---CAUCGCCCGgGG- -5'
13437 3' -54.8 NC_003409.1 + 11501 0.67 0.89393
Target:  5'- ---cGGCGUggUUGCCGUGGacaccacauuucCacccaccuacuuccaGGGCCCCa -3'
miRNA:   3'- cuaaUCGCA--AACGGCAUC------------G---------------CCCGGGG- -5'
13437 3' -54.8 NC_003409.1 + 119793 0.67 0.884265
Target:  5'- ----cGCGUgccaggcGCCGgcGUGGGCgCCg -3'
miRNA:   3'- cuaauCGCAaa-----CGGCauCGCCCGgGG- -5'
13437 3' -54.8 NC_003409.1 + 18993 0.67 0.877084
Target:  5'- ---gAGC---UGCCcccGCGGGCCCCu -3'
miRNA:   3'- cuaaUCGcaaACGGcauCGCCCGGGG- -5'
13437 3' -54.8 NC_003409.1 + 71521 0.67 0.869676
Target:  5'- -uUUAGUGgaggauaaGCUGUAGCuGGGUCCUa -3'
miRNA:   3'- cuAAUCGCaaa-----CGGCAUCG-CCCGGGG- -5'
13437 3' -54.8 NC_003409.1 + 110500 0.68 0.854203
Target:  5'- --aUAGaaug-GUCGUAGCGGGUCCg -3'
miRNA:   3'- cuaAUCgcaaaCGGCAUCGCCCGGGg -5'
13437 3' -54.8 NC_003409.1 + 113568 0.7 0.755912
Target:  5'- ----cGCGguggGCCGUcAGCuGGGCCUCa -3'
miRNA:   3'- cuaauCGCaaa-CGGCA-UCG-CCCGGGG- -5'
13437 3' -54.8 NC_003409.1 + 111990 0.7 0.736205
Target:  5'- ---gGGCGUggUGCCGgauGCaGGGCCUg -3'
miRNA:   3'- cuaaUCGCAa-ACGGCau-CG-CCCGGGg -5'
13437 3' -54.8 NC_003409.1 + 43783 0.7 0.716124
Target:  5'- --cUGGCGUagGCC---GCGGGCCCg -3'
miRNA:   3'- cuaAUCGCAaaCGGcauCGCCCGGGg -5'
13437 3' -54.8 NC_003409.1 + 118014 0.73 0.567244
Target:  5'- cGAUUAGUGUUguccccccgagugGCC--AGCGuGGCCCCg -3'
miRNA:   3'- -CUAAUCGCAAa------------CGGcaUCGC-CCGGGG- -5'
13437 3' -54.8 NC_003409.1 + 109081 0.97 0.018882
Target:  5'- cGAUUAGCGUUguCCGUAGCGGGCCCCg -3'
miRNA:   3'- -CUAAUCGCAAacGGCAUCGCCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.