miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13437 5' -60.5 NC_003409.1 + 84826 0.66 0.714654
Target:  5'- -aGGGGUaacaUGCCCGuGGACGCCuCGu- -3'
miRNA:   3'- ugCCCCAg---ACGGGC-CUUGUGGcGUcu -5'
13437 5' -60.5 NC_003409.1 + 47109 0.66 0.704907
Target:  5'- -aGGaGGUUcGCCCGGAcagccuGCGCCuaacGCGGAu -3'
miRNA:   3'- ugCC-CCAGaCGGGCCU------UGUGG----CGUCU- -5'
13437 5' -60.5 NC_003409.1 + 116413 0.66 0.704907
Target:  5'- uGCGGucGGUCccGCCCGGGGCGCgaaGCGc- -3'
miRNA:   3'- -UGCC--CCAGa-CGGGCCUUGUGg--CGUcu -5'
13437 5' -60.5 NC_003409.1 + 51761 0.66 0.695103
Target:  5'- gACGGGGUaucGCCgccaGaGGGCGCCGUAGc -3'
miRNA:   3'- -UGCCCCAga-CGGg---C-CUUGUGGCGUCu -5'
13437 5' -60.5 NC_003409.1 + 86915 0.66 0.695103
Target:  5'- uCGGGGUUcacagcggGCuCCGGugcagaauaaAGCACCGUAGGu -3'
miRNA:   3'- uGCCCCAGa-------CG-GGCC----------UUGUGGCGUCU- -5'
13437 5' -60.5 NC_003409.1 + 8534 0.68 0.595619
Target:  5'- cCGGGGUUUGaggaaCCGaAAC-CCGCAGGa -3'
miRNA:   3'- uGCCCCAGACg----GGCcUUGuGGCGUCU- -5'
13437 5' -60.5 NC_003409.1 + 111516 0.69 0.517442
Target:  5'- cGCGGGGUUU-CCUGGAcACGCCcucuGUAGAg -3'
miRNA:   3'- -UGCCCCAGAcGGGCCU-UGUGG----CGUCU- -5'
13437 5' -60.5 NC_003409.1 + 18970 0.7 0.47987
Target:  5'- cGCGGGGccauuuuggUC-GCCUGGAGCugcccCCGCGGGc -3'
miRNA:   3'- -UGCCCC---------AGaCGGGCCUUGu----GGCGUCU- -5'
13437 5' -60.5 NC_003409.1 + 118487 0.75 0.239832
Target:  5'- uGCGGGGgaccGCgCCGGggUACUGCAGGg -3'
miRNA:   3'- -UGCCCCaga-CG-GGCCuuGUGGCGUCU- -5'
13437 5' -60.5 NC_003409.1 + 132840 0.75 0.22282
Target:  5'- aACGGGGUCUcGCCCaGAuccccagGCACCGCGc- -3'
miRNA:   3'- -UGCCCCAGA-CGGGcCU-------UGUGGCGUcu -5'
13437 5' -60.5 NC_003409.1 + 109115 1.08 0.001235
Target:  5'- gACGGGGUCUGCCCGGAACACCGCAGAu -3'
miRNA:   3'- -UGCCCCAGACGGGCCUUGUGGCGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.