Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13438 | 3' | -62.2 | NC_003409.1 | + | 113593 | 0.66 | 0.575335 |
Target: 5'- -cGCCcgUCGCugGCGcAGGCGaucgccguguuGCGCGu -3' miRNA: 3'- guCGGa-AGCGugCGCcUCCGC-----------CGCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 27075 | 0.69 | 0.400844 |
Target: 5'- -cGCCUgUCGUACGCgGGGGGUGGgGgAu -3' miRNA: 3'- guCGGA-AGCGUGCG-CCUCCGCCgCgU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 107421 | 0.69 | 0.409201 |
Target: 5'- cUAGCCUUCGCGgugggagccuguUGCaGGAGGgUGGCGaCAc -3' miRNA: 3'- -GUCGGAAGCGU------------GCG-CCUCC-GCCGC-GU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 53229 | 0.69 | 0.434912 |
Target: 5'- -cGUgUUCGCGCGaCGGcGGCGGaGCAa -3' miRNA: 3'- guCGgAAGCGUGC-GCCuCCGCCgCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 15868 | 0.68 | 0.443688 |
Target: 5'- uCGGCCcuaaUCGCuACGUGGcaAGGUGGUGUAc -3' miRNA: 3'- -GUCGGa---AGCG-UGCGCC--UCCGCCGCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 52165 | 0.68 | 0.470598 |
Target: 5'- aAGCUcagUCGCACG-GGGGGUGGCcugugGCGu -3' miRNA: 3'- gUCGGa--AGCGUGCgCCUCCGCCG-----CGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 52071 | 0.68 | 0.470598 |
Target: 5'- gAGCCUcgagCGcCAUGUGGuGaGUGGCGCGg -3' miRNA: 3'- gUCGGAa---GC-GUGCGCCuC-CGCCGCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 111135 | 0.68 | 0.470598 |
Target: 5'- cCGGCCUUCGCccucagucCGgGGGGGCuggaGCGCc -3' miRNA: 3'- -GUCGGAAGCGu-------GCgCCUCCGc---CGCGu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 109524 | 0.68 | 0.476996 |
Target: 5'- gGGCCagCGCcaccucccuuggguACGCGuccGGGGCGGCGUg -3' miRNA: 3'- gUCGGaaGCG--------------UGCGC---CUCCGCCGCGu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 94335 | 0.68 | 0.479751 |
Target: 5'- gCAGCCcgacaaccgGCugGgGGGGGCGGUGUu -3' miRNA: 3'- -GUCGGaag------CGugCgCCUCCGCCGCGu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 109999 | 0.67 | 0.526733 |
Target: 5'- -cGCCUccCGC-CGCGGcgucuuGGGCGGCGg- -3' miRNA: 3'- guCGGAa-GCGuGCGCC------UCCGCCGCgu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 42191 | 0.67 | 0.55574 |
Target: 5'- gCAGCUUcaUgGcCACGUGGGGGUGGCa-- -3' miRNA: 3'- -GUCGGA--AgC-GUGCGCCUCCGCCGcgu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 134492 | 0.66 | 0.573367 |
Target: 5'- gCAGCCUgacuacagagggUGUcCcCGGGGGCGGUGCGc -3' miRNA: 3'- -GUCGGAa-----------GCGuGcGCCUCCGCCGCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 59024 | 0.68 | 0.452563 |
Target: 5'- uGGUCUUUGCugG-GaGGGGCGGCGg- -3' miRNA: 3'- gUCGGAAGCGugCgC-CUCCGCCGCgu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 37958 | 0.7 | 0.376435 |
Target: 5'- aGGCCaggCGCGCcuGCGcagcucaaGAGGCGGCGCc -3' miRNA: 3'- gUCGGaa-GCGUG--CGC--------CUCCGCCGCGu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 30489 | 0.71 | 0.330708 |
Target: 5'- cCAGUggUUUCGCGCucGCGGAGGCuGGCGa- -3' miRNA: 3'- -GUCG--GAAGCGUG--CGCCUCCG-CCGCgu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 87909 | 0.73 | 0.246086 |
Target: 5'- aAGCCguguUUCGUGCuGCGGcuuGGGCGGCGCc -3' miRNA: 3'- gUCGG----AAGCGUG-CGCC---UCCGCCGCGu -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 131249 | 0.73 | 0.24038 |
Target: 5'- gCGGCCacacgGCGCGgGGAGGUGGgGCAc -3' miRNA: 3'- -GUCGGaag--CGUGCgCCUCCGCCgCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 38608 | 0.74 | 0.20348 |
Target: 5'- cCAGCCaagUUGCGCGCcGAGGCGcCGCAg -3' miRNA: 3'- -GUCGGa--AGCGUGCGcCUCCGCcGCGU- -5' |
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13438 | 3' | -62.2 | NC_003409.1 | + | 111840 | 0.66 | 0.595082 |
Target: 5'- gGGUUUccUCGCGucggccacCGCGGGGGCGGC-CGu -3' miRNA: 3'- gUCGGA--AGCGU--------GCGCCUCCGCCGcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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