miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13439 3' -57.3 NC_003409.1 + 27855 0.66 0.803028
Target:  5'- cACAaagGCGCCACa--GCgACGCCGGc- -3'
miRNA:   3'- -UGUa--CGCGGUGaagCGgUGCGGUCuu -5'
13439 3' -57.3 NC_003409.1 + 60566 0.66 0.793889
Target:  5'- gGCAUGCGCUcCaUCGCCucuuuCGUCAGc- -3'
miRNA:   3'- -UGUACGCGGuGaAGCGGu----GCGGUCuu -5'
13439 3' -57.3 NC_003409.1 + 20637 0.66 0.784598
Target:  5'- -uGUGCGCCAggccgCGCC-CGgCCAGGAa -3'
miRNA:   3'- ugUACGCGGUgaa--GCGGuGC-GGUCUU- -5'
13439 3' -57.3 NC_003409.1 + 130517 0.66 0.784598
Target:  5'- aACAUGCuGCCACU--GCCACGgauggaacaUCAGAGa -3'
miRNA:   3'- -UGUACG-CGGUGAagCGGUGC---------GGUCUU- -5'
13439 3' -57.3 NC_003409.1 + 24368 0.66 0.784598
Target:  5'- cACGUGcCGCCGCgcgCGCaguGCGCgAGGGg -3'
miRNA:   3'- -UGUAC-GCGGUGaa-GCGg--UGCGgUCUU- -5'
13439 3' -57.3 NC_003409.1 + 81177 0.67 0.765599
Target:  5'- ---gGCGaCguCUUCGCCGCGCCAc-- -3'
miRNA:   3'- uguaCGC-GguGAAGCGGUGCGGUcuu -5'
13439 3' -57.3 NC_003409.1 + 112795 0.67 0.716124
Target:  5'- gGCAaGgGCCGCgcggGCCACGCgAGAAc -3'
miRNA:   3'- -UGUaCgCGGUGaag-CGGUGCGgUCUU- -5'
13439 3' -57.3 NC_003409.1 + 19373 0.68 0.705967
Target:  5'- gGCAauaGCGUCAUUUCGCgCAaggguCGCCAGAc -3'
miRNA:   3'- -UGUa--CGCGGUGAAGCG-GU-----GCGGUCUu -5'
13439 3' -57.3 NC_003409.1 + 31935 0.68 0.685469
Target:  5'- cGCGUGUccguacacgGCCACUgUGCCGCGUCGGc- -3'
miRNA:   3'- -UGUACG---------CGGUGAaGCGGUGCGGUCuu -5'
13439 3' -57.3 NC_003409.1 + 122983 0.68 0.672042
Target:  5'- gACGUcCGUCGCUaagacugccucuguUCGCCACGCCAa-- -3'
miRNA:   3'- -UGUAcGCGGUGA--------------AGCGGUGCGGUcuu -5'
13439 3' -57.3 NC_003409.1 + 99649 0.69 0.602366
Target:  5'- cACGUGUGCUg---CGCCACGCCAa-- -3'
miRNA:   3'- -UGUACGCGGugaaGCGGUGCGGUcuu -5'
13439 3' -57.3 NC_003409.1 + 74151 0.71 0.481368
Target:  5'- gAUGUGCacGCCACggaugUCGCCACGUCuGAGg -3'
miRNA:   3'- -UGUACG--CGGUGa----AGCGGUGCGGuCUU- -5'
13439 3' -57.3 NC_003409.1 + 22242 0.73 0.381743
Target:  5'- cGCGUGCGCCGCUUCGCagGCGaCCc--- -3'
miRNA:   3'- -UGUACGCGGUGAAGCGg-UGC-GGucuu -5'
13439 3' -57.3 NC_003409.1 + 118363 0.75 0.326666
Target:  5'- -gGUGCGCCGCgccggguuccuggggUgCGCCGCGCCGGGu -3'
miRNA:   3'- ugUACGCGGUGa--------------A-GCGGUGCGGUCUu -5'
13439 3' -57.3 NC_003409.1 + 118317 0.75 0.326666
Target:  5'- -gGUGCGCCGCgccggguuccuggggUgCGCCGCGCCGGGu -3'
miRNA:   3'- ugUACGCGGUGa--------------A-GCGGUGCGGUCUu -5'
13439 3' -57.3 NC_003409.1 + 118409 0.75 0.326666
Target:  5'- -gGUGCGCCGCgccggguuccuggggUgCGCCGCGCCGGGu -3'
miRNA:   3'- ugUACGCGGUGa--------------A-GCGGUGCGGUCUu -5'
13439 3' -57.3 NC_003409.1 + 109558 1.06 0.002479
Target:  5'- gACAUGCGCCACUUCGCCACGCCAGAAg -3'
miRNA:   3'- -UGUACGCGGUGAAGCGGUGCGGUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.