miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13439 5' -57.5 NC_003409.1 + 133190 0.66 0.824438
Target:  5'- ----aCCUGCagGCGcUGGCGCCGCGg- -3'
miRNA:   3'- aaaagGGGCG--CGCuACCGUGGUGCag -5'
13439 5' -57.5 NC_003409.1 + 104811 0.66 0.824438
Target:  5'- --gUCCCUGCGCaAUGGUGCCucacuaggcGCGg- -3'
miRNA:   3'- aaaAGGGGCGCGcUACCGUGG---------UGCag -5'
13439 5' -57.5 NC_003409.1 + 52010 0.66 0.797989
Target:  5'- ---cCCCCGUGCGAcUGaGCuucaACCcCGUCa -3'
miRNA:   3'- aaaaGGGGCGCGCU-AC-CG----UGGuGCAG- -5'
13439 5' -57.5 NC_003409.1 + 111842 0.66 0.788857
Target:  5'- gUUUCCUCGCGUc--GGCcACCGCGg- -3'
miRNA:   3'- aAAAGGGGCGCGcuaCCG-UGGUGCag -5'
13439 5' -57.5 NC_003409.1 + 19081 0.67 0.750988
Target:  5'- ---gCCCCGCG-GAUGGCGCUccugugcaucGCGa- -3'
miRNA:   3'- aaaaGGGGCGCgCUACCGUGG----------UGCag -5'
13439 5' -57.5 NC_003409.1 + 86305 0.67 0.750988
Target:  5'- -gUUCaacaCCGCGCGAuaccUGGCaACCACa-- -3'
miRNA:   3'- aaAAGg---GGCGCGCU----ACCG-UGGUGcag -5'
13439 5' -57.5 NC_003409.1 + 14989 0.67 0.741231
Target:  5'- -cUUCCuuGCGCGuuugcGGCggaggGCCGCGUa -3'
miRNA:   3'- aaAAGGggCGCGCua---CCG-----UGGUGCAg -5'
13439 5' -57.5 NC_003409.1 + 15564 0.68 0.721438
Target:  5'- --gUCUCCG-GCGuUGGCACCAUGc- -3'
miRNA:   3'- aaaAGGGGCgCGCuACCGUGGUGCag -5'
13439 5' -57.5 NC_003409.1 + 132826 0.68 0.72044
Target:  5'- --gUCCCCcuggcugGCGCuguccGAUGGUGuCCGCGUCu -3'
miRNA:   3'- aaaAGGGG-------CGCG-----CUACCGU-GGUGCAG- -5'
13439 5' -57.5 NC_003409.1 + 87981 0.68 0.680993
Target:  5'- --cUCCCaUGCGCGAUGGguCUaggcugccaucuACGUCc -3'
miRNA:   3'- aaaAGGG-GCGCGCUACCguGG------------UGCAG- -5'
13439 5' -57.5 NC_003409.1 + 40527 0.69 0.660488
Target:  5'- --cUCUCCG-GCGGUGGCgGCCAUGg- -3'
miRNA:   3'- aaaAGGGGCgCGCUACCG-UGGUGCag -5'
13439 5' -57.5 NC_003409.1 + 82419 0.69 0.63989
Target:  5'- -aUUCCCUGgGcCGAcugGGUACCACGg- -3'
miRNA:   3'- aaAAGGGGCgC-GCUa--CCGUGGUGCag -5'
13439 5' -57.5 NC_003409.1 + 108299 0.7 0.582287
Target:  5'- gUUUCCUCGCGCGAugcuuUucucugggccucugcGGCGCgCAUGUCg -3'
miRNA:   3'- aAAAGGGGCGCGCU-----A---------------CCGUG-GUGCAG- -5'
13439 5' -57.5 NC_003409.1 + 80437 0.7 0.578202
Target:  5'- --cUCCCCGUGUag-GGCGCCACa-- -3'
miRNA:   3'- aaaAGGGGCGCGcuaCCGUGGUGcag -5'
13439 5' -57.5 NC_003409.1 + 52987 0.71 0.537755
Target:  5'- --gUCCCgggGCGCGAUGGUAUgGCGcUCa -3'
miRNA:   3'- aaaAGGGg--CGCGCUACCGUGgUGC-AG- -5'
13439 5' -57.5 NC_003409.1 + 120282 0.71 0.50807
Target:  5'- --aUCCCCGUcCGGUGGCGCUcaACGcCa -3'
miRNA:   3'- aaaAGGGGCGcGCUACCGUGG--UGCaG- -5'
13439 5' -57.5 NC_003409.1 + 131406 0.72 0.479101
Target:  5'- --cUCCCCGCGCcGUGugGCCGCGUUg -3'
miRNA:   3'- aaaAGGGGCGCGcUACcgUGGUGCAG- -5'
13439 5' -57.5 NC_003409.1 + 16638 0.72 0.459311
Target:  5'- ---gCCCCGCGCGGccgccagguagucUGGCACaacaacagcuaCACGUCc -3'
miRNA:   3'- aaaaGGGGCGCGCU-------------ACCGUG-----------GUGCAG- -5'
13439 5' -57.5 NC_003409.1 + 40798 0.74 0.37985
Target:  5'- ---gCCCCGgGCGgcGGCucgccuaaugcaaGCCACGUCa -3'
miRNA:   3'- aaaaGGGGCgCGCuaCCG-------------UGGUGCAG- -5'
13439 5' -57.5 NC_003409.1 + 109594 1.08 0.002023
Target:  5'- uUUUUCCCCGCGCGAUGGCACCACGUCa -3'
miRNA:   3'- -AAAAGGGGCGCGCUACCGUGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.