Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13440 | 3' | -56.5 | NC_003409.1 | + | 116405 | 0.66 | 0.876032 |
Target: 5'- -cUGUGAGGGGugGGCcaGgUCUAGgCg -3' miRNA: 3'- cuAUACUCUCCugCCG--CgAGGUCgGg -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 18324 | 0.66 | 0.876032 |
Target: 5'- --gGUGGGgacuuguaccGGGA-GGCGCUCacuGGCCCc -3' miRNA: 3'- cuaUACUC----------UCCUgCCGCGAGg--UCGGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 21644 | 0.66 | 0.868683 |
Target: 5'- ---uUGGGAGGugGG-GUaCCAGCUg -3' miRNA: 3'- cuauACUCUCCugCCgCGaGGUCGGg -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 39006 | 0.66 | 0.853346 |
Target: 5'- --gAUGAGAGcGAUGGC-CUgCAGUCUc -3' miRNA: 3'- cuaUACUCUC-CUGCCGcGAgGUCGGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 3003 | 0.66 | 0.851766 |
Target: 5'- cGUGUGGGAaagcgacagaaggGGGCGGCGUUUCcauaugaGGCCa -3' miRNA: 3'- cUAUACUCU-------------CCUGCCGCGAGG-------UCGGg -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 25012 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24982 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24952 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24922 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24892 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24862 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24832 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24802 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 24772 | 0.66 | 0.84537 |
Target: 5'- ----gGGGAGGGUGGCGCgCCGGgauCCCc -3' miRNA: 3'- cuauaCUCUCCUGCCGCGaGGUC---GGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 31213 | 0.67 | 0.828839 |
Target: 5'- ----aGAgGAGGACGGCGgU--GGCCCu -3' miRNA: 3'- cuauaCU-CUCCUGCCGCgAggUCGGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 109369 | 0.67 | 0.820298 |
Target: 5'- ----aGGGAGG-UGGCGCU--GGCCCc -3' miRNA: 3'- cuauaCUCUCCuGCCGCGAggUCGGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 105049 | 0.67 | 0.80181 |
Target: 5'- uGAUGUGuGGGGGCuGGUGCUCgucugguggcuggUGGCCa -3' miRNA: 3'- -CUAUACuCUCCUG-CCGCGAG-------------GUCGGg -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 128592 | 0.67 | 0.793672 |
Target: 5'- ---uUGGGGGGugGGCGa-CCAGUugCCa -3' miRNA: 3'- cuauACUCUCCugCCGCgaGGUCG--GG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 41988 | 0.67 | 0.793672 |
Target: 5'- -uUGUGAGcgauGGcACGGCGCagcgagaCCAGCUCu -3' miRNA: 3'- cuAUACUCu---CC-UGCCGCGa------GGUCGGG- -5' |
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13440 | 3' | -56.5 | NC_003409.1 | + | 88197 | 0.68 | 0.775171 |
Target: 5'- cGAUGgcgccuuAGGGGGagcaGGUGCUgCAGCCCc -3' miRNA: 3'- -CUAUac-----UCUCCUg---CCGCGAgGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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